Fetching the paper…
Reading the bibliography…
We introduce Paper2Agent, an automated framework that converts research papers into AI agents.
The collage authoring environment
Piotr Nowakowski, Eryk Ciepiela, Daniel Harężlak, Joanna Kocot, Marek Kasztelnik, Tomasz Bartyński, Jan Meizner, Grzegorz Dyk, and Maciej Malawski · 2011
Earlier work this paper cites.
Sortilin, encoded by the cardiovascular risk gene sort1, and its suggested functions in cardiovascular disease
Mads Kjolby, Morten Schallburg Nielsen, and Claus Munck Petersen · 2015
Earlier work this paper cites.
M-phase phosphoprotein 9 regulates ciliogenesis by modulating cp110-cep97 complex localization at the mother centriole
Ning Huang, Donghui Zhang, Fangyuan Li, Peiyuan Chai, Song Wang, Junlin Teng, and Jianguo Chen · 2018
Earlier work this paper cites.
Scanpy: large-scale single-cell gene expression data analysis
F. Alexander Wolf, Philipp Angerer, and Fabian J. Theis · 2018
Earlier work this paper cites.
Ten simple rules for writing and sharing computational analyses in jupyter notebooks
Adam Rule, Amanda Birmingham, Cristal Zuniga, Ilkay Altintas, Shih-Cheng Huang, Rob Knight, Niema Moshiri, Mai H. Nguyen, Sara Brin Rosenthal, Fernando Pérez, et al · 2019
Earlier work this paper cites.
Opportunities and challenges for transcriptome-wide association studies
Michael Wainberg, Nasa Sinnott-Armstrong, Nicholas Mancuso, Alvaro N. Barbeira, David A. Knowles, David Golan, Raili Ermel, Arno Ruusalepp, Thomas Quertermous, Ke Hao, et al · 2019
Earlier work this paper cites.
Papers with code is joining facebook ai
Robert Stojnic and Ross Taylor · 2019
Earlier work this paper cites.
The gtex consortium atlas of genetic regulatory effects across human tissues
GTEx Consortium · 2020
Earlier work this paper cites.
A large-scale study on research code quality and execution
Ana Trisovic, Matthew K. Lau, Thomas Pasquier, and Mercè Crosas · 2022
Earlier work this paper cites.
Why don’t we share data and code? perceived barriers and benefits to public archiving practices
Dylan G. E. Gomes, Patrice Pottier, Robert Crystal-Ornelas, Emma J. Hudgins, Vivienne Foroughirad, Luna L. Sánchez-Reyes, Rachel Turba, Paula Andrea Martinez, David Moreau, Michael G. Bertram, et al · 2022
Earlier work this paper cites.
Systematic differences in discovery of genetic effects on gene expression and complex traits
Hakhamanesh Mostafavi, Jeffrey P. Spence, Sahin Naqvi, and Jonathan K. Pritchard · 2023
Cited alongside, same era.
React: synergizing reasoning and acting in language models
Shunyu Yao, Jeffrey Zhao, Dian Yu, Nan Du, Izhak Shafran, Karthik Narasimhan, and Yuan Cao · 2023
Cited alongside, same era.
Tissue: uncertainty-calibrated prediction of single-cell spatial transcriptomics improves downstream analyses
Eric D. Sun, Rong Ma, Paloma Navarro Negredo, Anne Brunet, and James Zou · 2024
Cited alongside, same era.
Agentless: demystifying llm-based software engineering agents
Chunqiu Steven Xia, Yinlin Deng, Soren Dunn, and Lingming Zhang · 2024
Cited alongside, same era.
Jiawei Gu, Xuhui Jiang, Zhichao Shi, Hexiang Tan, Xuehao Zhai, Chengjin Xu, Wei Li, Yinghan Shen, Shengjie Ma, Honghao Liu, et al · 2024
Juraj Gottweis, Wei-Hung Weng, Alexander Daryin, Tao Tu, Anil Palepu, Petar Sirkovic, Artiom Myaskovsky, Felix Weissenberger, Keran Rong, Ryutaro Tanno, et al · 2025
Closest in time.
Robin: a multi-agent system for automating scientific discovery
Ali Essam Ghareeb, Benjamin Chang, Ludovico Mitchener, Angela Yiu, Caralyn J. Szostkiewicz, Jon M. Laurent, Muhammed T. Razzak, Andrew D. White, Michaela M. Hinks, and Samuel G. Rodriques · 2025
Closest in time.
Crispr-gpt for agentic automation of gene-editing experiments
Yuanhao Qu, Kaixuan Huang, Ming Yin, Kanghong Zhan, Dyllan Liu, Di Yin, Henry C. Cousins, William A. Johnson, Xiaotong Wang, Mihir Shah, et al · 2025
Closest in time.
Cellvoyager: ai compbio agent generates new insights by autonomously analyzing biological data
Samuel Alber, Bowen Chen, Eric Sun, Alina Isakova, Aaron J. Wilk, and James Zou · 2025
Closest in time.
Biomni: a general-purpose biomedical ai agent
Kexin Huang, Serena Zhang, Hanchen Wang, Yuanhao Qu, Yingzhou Lu, Yusuf Roohani, Ryan Li, Lin Qiu, Gavin Li, Junze Zhang, et al · 2025
alphaXiv searches the wider corpus for related work and actual follow-ups.
alphaXiv is searching for related work…
Cited alongside, same era.
Sakana “ai scientist”
Sakana.AI · 2024
Cited alongside, same era.
Alphagenome: advancing regulatory variant effect prediction with a unified dna sequence model
Ziga Avsec, Natasha Latysheva, Jun Cheng, Guido Novati, Kyle R. Taylor, Tom Ward, Clare Bycroft, Lauren Nicolaisen, Eirini Arvaniti, Joshua Pan, et al · 2025
Cited alongside, same era.
The virtual lab of ai agents designs new sars-cov-2 nanobodies
Kyle Swanson, Wesley Wu, Nash L. Bulaong, John E. Pak, and James Zou · 2025
Cited alongside, same era.
Model context protocol (mcp): landscape, security threats, and future research directions
Xinyi Hou, Yanjie Zhao, Shenao Wang, and Haoyu Wang · 2025
Cited alongside, same era.
Closest in time.
Claude code: deep coding at terminal velocity
Anthropic · 2025
Closest in time.
From articles to code: on-demand generation of core algorithms from scientific publications
Cameron S. Movassaghi, Amanda Momenzadeh, and Jesse G. Meyer · 2025
Closest in time.
Paper2code: automating code generation from scientific papers in machine learning
Minju Seo, Jinheon Baek, Seongyun Lee, and Sung Ju Hwang · 2025
Closest in time.
Genome-wide association meta-analysis of childhood adhd symptoms and diagnosis identifies new loci and potential effector genes
Camiel M. van der Laan, Hill F. Ip, Marijn Schipper, Jouke-Jan Hottenga, Beate St Pourcain, Tetyana Zayats, René Pool, Eva M. L. Krapohl, Isabell Brikell, María Soler Artigas, et al · 2025
Closest in time.