Fetching the paper…
Reading the bibliography…
Single-cell RNA sequencing (scRNA-seq) data is a potent tool for comprehending the "language of life" and can provide insights into various downstream biomedical tasks.
Liii. on lines and planes of closest fit to systems of points in space
Karl Pearson F.R.S · 1901
Earlier work this paper cites.
Analysis of a complex of statistical variables into principal components
Harold Hotelling · 1933
Earlier work this paper cites.
Overexpression of the thymosin
Wei-Shu Wang, Po-Min Chen, Hung-Liang Hsiao, Huann-Sheng Wang, Wen-Yih Liang, and Yeu Su · 2004
Earlier work this paper cites.
Principal component analysis
Heng Tao Shen · 2009
Earlier work this paper cites.
The cancer cell line encyclopedia enables predictive modelling of anticancer drug sensitivity
Jordi Barretina, Giordano Caponigro, Nicolas Stransky, Kavitha Venkatesan, Adam A Margolin, Sungjoon Kim, Christopher J Wilson, Joseph Lehár, Gregory V Kryukov, Dmitriy Sonkin, et al · 2012
Earlier work this paper cites.
The cancer cell line encyclopedia enables predictive modelling of anticancer drug sensitivity
Jordi Barretina, Giordano Caponigro, Nicolas Stransky, Kavitha Venkatesan, Adam A Margolin, Sungjoon Kim, Christopher J Wilson, Joseph Lehár, Gregory V Kryukov, Dmitriy Sonkin, et al · 2012
Earlier work this paper cites.
Actb in cancer
Chunmei Guo, Shuqing Liu, Jiasheng Wang, Ming-Zhong Sun, and Frederick T Greenaway · 2013
Earlier work this paper cites.
Accelerating t-sne using tree-based algorithms
Laurens van der Maaten · 2014
Earlier work this paper cites.
A single-cell transcriptomic map of the human and mouse pancreas reveals inter-and intra-cell population structure
Maayan Baron, Adrian Veres, Samuel L Wolock, Aubrey L Faust, Renaud Gaujoux, Amedeo Vetere, Jennifer Hyoje Ryu, Bridget K Wagner, Shai S Shen-Orr, Allon M Klein, et al · 2016
Earlier work this paper cites.
A landscape of pharmacogenomic interactions in cancer
Francesco Iorio, Theo A Knijnenburg, Daniel J Vis, Graham R Bignell, Michael P Menden, Michael Schubert, Nanne Aben, Emanuel Gonçalves, Syd Barthorpe, Howard Lightfoot, et al · 2016
Earlier work this paper cites.
A single-cell transcriptomic map of the human and mouse pancreas reveals inter-and intra-cell population structure
Maayan Baron, Adrian Veres, Samuel L Wolock, Aubrey L Faust, Renaud Gaujoux, Amedeo Vetere, Jennifer Hyoje Ryu, Bridget K Wagner, Shai S Shen-Orr, Allon M Klein, et al · 2016
Earlier work this paper cites.
A landscape of pharmacogenomic interactions in cancer
Francesco Iorio, Theo A Knijnenburg, Daniel J Vis, Graham R Bignell, Michael P Menden, Michael Schubert, Nanne Aben, Emanuel Gonçalves, Syd Barthorpe, Howard Lightfoot, et al · 2016
Earlier work this paper cites.
Massively parallel digital transcriptional profiling of single cells
Grace XY Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu, et al · 2017
Earlier work this paper cites.
Global proteomics-based identification and validation of thymosin beta-4 x-linked as a prognostic marker for head and neck squamous cell carcinoma
Li-Hsing Chi, Wei-Min Chang, Yu-Chan Chang, Yung-Chieh Chan, Chia-Chen Tai, Kam-Wing Leung, Chi-Long Chen, Alexander TH Wu, Tsung-Ching Lai, Yu-Chuan Li, et al · 2017
Earlier work this paper cites.
Massively parallel digital transcriptional profiling of single cells
Grace XY Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu, et al · 2017
Earlier work this paper cites.
Unsupervised feature learning via non-parametric instance discrimination
Zhirong Wu, Yuanjun Xiong, Stella X. Yu, and Dahua Lin · 2018
Earlier work this paper cites.
Naught all zeros in sequence count data are the same
Justin D. Silverman, Kimberly Roche, Sayan Mukherjee, and Lawrence A. David · 2018
Earlier work this paper cites.
Autoimpute: Autoencoder based imputation of single-cell rna-seq data
Divyanshu Talwar, Aanchal Mongia, Debarka Sengupta, and Angshul Majumdar · 2018
Earlier work this paper cites.
Longitudinal single-cell rna sequencing of patient-derived primary cells reveals drug-induced infidelity in stem cell hierarchy
Ankur Sharma, Elaine Yiqun Cao, Vibhor Kumar, Xiaoqian Zhang, Hui Sun Leong, Angeline Mei Lin Wong, Neeraja Ramakrishnan, Muhammad Hakimullah, Hui Min Vivian Teo, Fui Teen Chong, et al · 2018
Earlier work this paper cites.
Scanpy: large-scale single-cell gene expression data analysis
F. Alexander Wolf, Philipp Angerer, and Fabian J Theis · 2018
Earlier work this paper cites.
Longitudinal single-cell rna sequencing of patient-derived primary cells reveals drug-induced infidelity in stem cell hierarchy
Ankur Sharma, Elaine Yiqun Cao, Vibhor Kumar, Xiaoqian Zhang, Hui Sun Leong, Angeline Mei Lin Wong, Neeraja Ramakrishnan, Muhammad Hakimullah, Hui Min Vivian Teo, Fui Teen Chong, et al · 2018
Earlier work this paper cites.
Sentence-bert: Sentence embeddings using siamese bert-networks
Nils Reimers and Iryna Gurevych · 2019
Earlier work this paper cites.
Momentum contrast for unsupervised visual representation learning
Kaiming He, Haoqi Fan, Yuxin Wu, Saining Xie, and Ross B. Girshick · 2019
Cited alongside, same era.
Droplet scrna-seq is not zero-inflated
Valentine Svensson · 2019
Cited alongside, same era.
Benchmarking principal component analysis for large-scale single-cell rna-sequencing
Koki Tsuyuzaki, Hiroyuki Sato, Kenta Sato, and Itoshi Nikaido · 2019
Cited alongside, same era.
Fast and precise single-cell data analysis using a hierarchical autoencoder
Duc Tran, Hung Nguyen, Bang Tran, Carlo la Vecchia, Hung Nguyen Luu, and Tin Nguyen · 2019
Cited alongside, same era.
Panglaodb: a web server for exploration of mouse and human single-cell rna sequencing data
Oscar Franzén, Li-Ming Gan, and Johan LM Björkegren · 2019
Cited alongside, same era.
Panglaodb: a web server for exploration of mouse and human single-cell rna sequencing data
Single-cell transcriptional changes associated with drug tolerance and response to combination therapies in cancer
Alexandre F Aissa, Abul BMMK Islam, Majd M Ariss, Cammille C Go, Alexandra E Rader, Ryan D Conrardy, Alexa M Gajda, Carlota Rubio-Perez, Klara Valyi-Nagy, Mary Pasquinelli, et al · 2021
Later among the works it cites.
Predicting heterogeneity in clone-specific therapeutic vulnerabilities using single-cell transcriptomic signatures
Chayaporn Suphavilai, Shumei Chia, Ankur Sharma, Lorna Tu, Rafael Peres Da Silva, Aanchal Mongia, Ramanuj DasGupta, and Niranjan Nagarajan · 2021
Later among the works it cites.
Tgsa: protein-protein association-based twin graph neural networks for drug response prediction with similarity augmentation
Yiheng Zhu, Zhenqiu Ouyang, Wenbo Chen, Ruiwei Feng, Danny Ziyi Chen, Ji Cao, and Jian Wu · 2021
Later among the works it cites.
A unified drug–target interaction prediction framework based on knowledge graph and recommendation system
Qing Ye, Chang-Yu Hsieh, Ziyi Yang, Yu Kang, Jiming Chen, Dongsheng Cao, Shibo He, and Tingjun Hou · 2021
Later among the works it cites.
alphaXiv searches the wider corpus for related work and actual follow-ups.
alphaXiv is searching for related work…
Oscar Franzén, Li-Ming Gan, and Johan LM Björkegren · 2019
Cited alongside, same era.
Elevated neoantigen levels in tumors with somatic mutations in the hla-a, hla-b, hla-c and b2m genes
Andrea Castro, Kivilcim Ozturk, Rachel Marty Pyke, Su Xian, Maurizio Zanetti, and Hannah Carter · 2019
Cited alongside, same era.
On the sentence embeddings from pre-trained language models
Bohan Li, Hao Zhou, Junxian He, Mingxuan Wang, Yiming Yang, and Lei Li · 2020
Cited alongside, same era.
Sparsely-connected autoencoder (sca) for single cell rnaseq data mining
Luca Alessandri, Francesca Cordero, Marco Beccuti, Nicola Licheri, Maddalena Arigoni, Martina Olivero, Francesca Di Renzo, Anna Sapino, and Raffaele Adolfo Calogero · 2020
Cited alongside, same era.
Evaluation of cell type annotation r packages on single-cell rna-seq data
Qianhui Huang, Yu Liu, Yuheng Du, and Lana X. Garmire · 2020
Cited alongside, same era.
A simple framework for contrastive learning of visual representations
Ting Chen, Simon Kornblith, Mohammad Norouzi, and Geoffrey Hinton · 2020
Cited alongside, same era.
Single-cell analysis of epha clustering phenotypes to probe cancer cell heterogeneity
Andrea Ravasio, Myint Z Myaing, Shumei Chia, Aditya Arora, Aneesh Sathe, Elaine Yiqun Cao, Cristina Bertocchi, Ankur Sharma, Bakya Arasi, Vin Yee Chung, et al · 2020
Cited alongside, same era.
Hanbing Wang, Baorui Liu, and Jia Wei · 2021
Later among the works it cites.
A pan-cancer analysis of the prognostic and immunological role of
Yuxi Gu, Shouyi Tang, Zhen Wang, Luyao Cai, Haosen Lian, Yingqiang Shen, and Yu Zhou · 2021
Later among the works it cites.
Single-cell transcriptional changes associated with drug tolerance and response to combination therapies in cancer
Alexandre F Aissa, Abul BMMK Islam, Majd M Ariss, Cammille C Go, Alexandra E Rader, Ryan D Conrardy, Alexa M Gajda, Carlota Rubio-Perez, Klara Valyi-Nagy, Mary Pasquinelli, et al · 2021
Later among the works it cites.
Predicting heterogeneity in clone-specific therapeutic vulnerabilities using single-cell transcriptomic signatures
Chayaporn Suphavilai, Shumei Chia, Ankur Sharma, Lorna Tu, Rafael Peres Da Silva, Aanchal Mongia, Ramanuj DasGupta, and Niranjan Nagarajan · 2021
Later among the works it cites.
Tgsa: protein-protein association-based twin graph neural networks for drug response prediction with similarity augmentation
Yiheng Zhu, Zhenqiu Ouyang, Wenbo Chen, Ruiwei Feng, Danny Ziyi Chen, Ji Cao, and Jian Wu · 2021
Later among the works it cites.
Scbert as a large-scale pretrained deep language model for cell type annotation of single-cell rna-seq data
Fan Yang, Wenchuan Wang, Fang Wang, Yuan Fang, Duyu Tang, Junzhou Huang, Hui Lu, and Jianhua Yao · 2022
Later among the works it cites.
Genenames.org: the hgnc resources in 2023
Ruth L. Seal, Bryony Braschi, Kristian A. Gray, Tamsin E. M. Jones, Susan Tweedie, Liora Haim-Vilmovsky, and Elspeth A. Bruford · 2022
Later among the works it cites.
Zero-preserving imputation of single-cell rna-seq data
George C. Linderman, Jun Zhao, Manolis Roulis, Piotr Bielecki, Richard A. Flavell, Boaz Nadler, and Yuval Kluger · 2022
Later among the works it cites.
sccan: single-cell clustering using autoencoder and network fusion
Bang Tran, Duc Tran, Hung Nguyen, Seungil Ro, and Tin Nguyen · 2022
Later among the works it cites.
Rethinking attention with performers, 2022
Krzysztof Choromanski, Valerii Likhosherstov, David Dohan, Xingyou Song, Andreea Gane, Tamas Sarlos, Peter Hawkins, Jared Davis, Afroz Mohiuddin, Lukasz Kaiser, David Belanger, Lucy Colwell, and Adrian Weller · 2022
Later among the works it cites.
Perceiver io: A general architecture for structured inputs & outputs, 2022
Andrew Jaegle, Sebastian Borgeaud, Jean-Baptiste Alayrac, Carl Doersch, Catalin Ionescu, David Ding, Skanda Koppula, Daniel Zoran, Andrew Brock, Evan Shelhamer, Olivier Hénaff, Matthew M. Botvinick, Andrew Zisserman, Oriol Vinyals, and Joāo Carreira · 2022
Later among the works it cites.
Contrastive learning enables rapid mapping to multimodal single-cell atlas of multimillion scale
Mengcheng Yang, Yueyuxiao Yang, Chenxi Xie, Ming Ni, Jian Liu, Huanming Yang, Feng Mu, and J. Wang · 2022
Later among the works it cites.
Graphmae: Self-supervised masked graph autoencoders
Zhenyu Hou, Xiao Liu, Yukuo Cen, Yuxiao Dong, Hongxia Yang, Chunjie Wang, and Jie Tang · 2022
Later among the works it cites.
Cancerscem: a database of single-cell expression map across various human cancers
Jingyao Zeng, Yadong Zhang, Yunfei Shang, Jialin Mai, Shuo Shi, Mingming Lu, Congfan Bu, Zhewen Zhang, Zaichao Zhang, Yang Li, et al · 2022
Later among the works it cites.
Cancerscem: a database of single-cell expression map across various human cancers
Jingyao Zeng, Yadong Zhang, Yunfei Shang, Jialin Mai, Shuo Shi, Mingming Lu, Congfan Bu, Zhewen Zhang, Zaichao Zhang, Yang Li, et al · 2022
Later among the works it cites.
A single-cell gene expression language model
William Connell, Umair Khan, and Michael J. Keiser · 2023
Closest in time.
Beta 2 microglobulin (b2m) tumor marker test
MedlinePlus · 2023
Closest in time.