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Several approaches have been developed that generate embeddings for Description Logic ontologies and use these embeddings in machine learning.
WHAT’S IN A LINK: Foundations for Semantic Networks , page 35–82
William A. Woods · 1975
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What’s in a semantic network?
James F. Allen and Alan M. Frisch · 1982
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Inferring ontology graph structures using OWL reasoning
Miguel Ángel Rodríguez-García and Robert Hoehndorf · 1999
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Gene ontology: tool for the unification of biology
Michael Ashburner, Catherine A. Ball, Judith A. Blake, David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, and Gavin Sherlock · 2000
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Concept graphs and predicate logic
Frithjof Dau · 2001
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The Description Logic Handbook: Theory, Implementation, and Applications
Franz Baader, Diego Calvanese, Deborah McGuinness, Daniele Nardi, and Peter F. Patel-Schneider, editors · 2003
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Mathematical logic with diagrams based on the existential graphs of peirce
F. Dau · 2005
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Genome Biology , 6(5):R46, 2005
Barry Smith, Werner Ceusters, Bert Klagges, Jacob Köhler, Anand Kumar, Jane Lomax, Chris Mungall, Fabian Neuhaus, Alan L Rector, and Cornelius Rosse · 2005
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The even more irresistible sroiq
Ian Horrocks, Oliver Kutz, and Ulrike Sattler · 2006
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A diagrammatic reasoning system for 𝒜 ℒ 𝒞 \mathcal{ALC}
Frithjof Dau and Peter Eklund · 2007
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The obo to owl mapping, go to owl 1.1!
Christine Golbreich and Ian Horrocks · 2007
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Logic, graphs, and algorithms
Martin Grohe · 2007
Cited alongside, same era.
The obo foundry: coordinated evolution of ontologies to support biomedical data integration
Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J Mungall, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H Scheuermann, Nigam Shah, Patricia L Whetzel, and Suzanna Lewis · 2007
Cited alongside, same era.
Graph-Based Representation and Reasoning for Ontologies , page 351–379
Dan R. Corbett · 2008
Cited alongside, same era.
Owl 2: The next step for owl
Bernardo Cuenca Grau, Ian Horrocks, Boris Motik, Bijan Parsia, Peter Patel-Schneider, and Ulrike Sattler · 2008
Cited alongside, same era.
Relations as patterns: bridging the gap between OBO and OWL
From existential graphs to conceptual graphs
John F. Sowa · 2013
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Learning entity and relation embeddings for knowledge graph completion
Yankai Lin, Zhiyuan Liu, Maosong Sun, Yang Liu, and Xuan Zhu · 2015
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Knowledge graph embedding: A survey of approaches and applications
Quan Wang, Zhendong Mao, Bin Wang, and Li Guo · 2017
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FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration
Damion M. Dooley, Emma J. Griffiths, Gurinder S. Gosal, Pier L. Buttigieg, Robert Hoehndorf, Matthew C. Lange, Lynn M. Schriml, Fiona S. L. Brinkman, and William W. L. Hsiao · 2018
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Knowledge graph completion: A review
Zhe Chen, Yuehan Wang, Bin Zhao, Jing Cheng, Xin Zhao, and Zongtao Duan · 2020
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Semantic similarity and machine learning with ontologies
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Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Janet Kelso, Dietrich Rebholz-Schuhmann, and Heinrich Herre · 2010
Cited alongside, same era.
Peirce’s tutorial on existential graphs
John F. Sowa · 2011
Cited alongside, same era.
Owl 2 web ontology language rdf-based semantics (second edition), 2012
Jeremy Carroll, Ivan Herman, and Peter Patel-Schneider · 2012
Cited alongside, same era.
Translating embeddings for modeling multi-relational data
Antoine Bordes, Nicolas Usunier, Alberto Garcia-Duran, Jason Weston, and Oksana Yakhnenko · 2013
Cited alongside, same era.
The incredible elk
Yevgeny Kazakov, Markus Krötzsch, and František Simančík · 2013
Cited alongside, same era.
OWL2Vec*: embedding of OWL ontologies
Jiaoyan Chen, Pan Hu, Ernesto Jimenez-Ruiz, Ole Magnus Holter, Denvar Antonyrajah, and Ian Horrocks
Cited in the paper.
Augmenting ontology alignment by semantic embedding and distant supervision
Jiaoyan Chen, Ernesto Jiménez-Ruiz, Ian Horrocks, Denvar Antonyrajah, Ali Hadian, and Jaehun Lee
Cited in the paper.
Maxat Kulmanov, Fatima Zohra Smaili, Xin Gao, and Robert Hoehndorf · 2020
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Beta embeddings for multi-hop logical reasoning in knowledge graphs
Hongyu Ren and Jure Leskovec · 2020
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Contextual semantic embeddings for ontology subsumption prediction, 2022
Jiaoyan Chen, Yuan He, Yuxia Geng, Ernesto Jimenez-Ruiz, Hang Dong, and Ian Horrocks · 2022
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Gammae: Gamma embeddings for logical queries on knowledge graphs
D. Yang, Peijun Qing, Y. Li, H. Lu, and Xiaodong Lin · 2022
Later among the works it cites.
mOWL: Python library for machine learning with biomedical ontologies
Fernando Zhapa-Camacho, Maxat Kulmanov, and Robert Hoehndorf · 2022
Later among the works it cites.