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Cryo-electron microscopy (EM) single particle reconstruction is an entirely general technique for 3D structure determination of macromolecular complexes.
The reconstruction of structure from electron micrographs of randomly oriented particles
Z. Kam · 1980
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A maximum-likelihood approach to single-particle image refinement
F. Sigworth · 1998
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Bilateral filtering for gray and color images
C. Tomasi and R. Manduchi · 1998
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Collective dynamics of ‘small-world’networks
D. J. Watts and S. H. Strogatz · 1998
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A novel neural network technique for analysis and classification of em single-particle images
A. Pascual-Montano, L. Donate, M. Valle, M. Barcena, R. Pascual-Marqui, and J. Carazo · 2001
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Forward-and-backward diffusion processes for adaptive image enhancement and denoising
G. Gilboa, N. Sochen, and Y. Y. Zeevi · 2002
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A non-local algorithm for image denoising
A. Buades, B. Coll, and J.-M. Morel · 2005
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Maximum-likelihood multi-reference refinement for electron microscopy images
S. H. Scheres, M. Valle, R. Nuñez, C. O. Sorzano, R. Marabini, G. T. Herman, and J.-M. Carazo · 2005
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Three-dimensional electron microscopy of macromolecular assemblies: visualization of biological molecules in their native state
J. Frank · 2006
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Modeling experimental image formation for likelihood-based classification of electron microscopy data
S. H. Scheres, R. Núñez-Ramírez, Y. Gómez-Llorente, C. San Martín, P. P. Eggermont, and J. M. Carazo · 2007
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Eman2: an extensible image processing suite for electron microscopy
G. Tang, L. Peng, P. R. Baldwin, D. S. Mann, W. Jiang, I. Rees, and S. J. Ludtke · 2007
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Diffusion interpretation of nonlocal neighborhood filters for signal denoising
A. Singer, Y. Shkolnisky, and B. Nadler · 2009
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Image restoration in cryo-electron microscopy
P. A. Penczek · 2010
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Maximum-likelihood methods in cryo-EM. part II: Application to experimental data
S. H. Scheres · 2010
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Image super-resolution via sparse representation
J. Yang, J. Wright, T. S. Huang, and Y. Ma · 2010
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Viewing angle classification of cryo-electron microscopy images using eigenvectors
A. Singer, Z. Zhao, Y. Shkolnisky, and R. Hadani · 2011
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The symmetries of image formation by scattering. i. theoretical framework
D. Giannakis, P. Schwander, and A. Ourmazd · 2012
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Relion: Implementation of a bayesian approach to cryo-EM structure determination
S. H. Scheres · 2012
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The symmetries of image formation by scattering. ii. applications
P. Schwander, D. Giannakis, C. H. Yoon, and A. Ourmazd · 2012
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Vector diffusion maps and the connection laplacian
A. Singer and H.-T. Wu · 2012
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Rotationally invariant image representation for viewing direction classification in cryo-em
Z. Zhao and A. Singer · 2014
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Denoising and covariance estimation of single particle cryo-em images
T. Bhamre, T. Zhang, and A. Singer · 2016
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Embeddings of Riemannian manifolds with finite eigenvector fields of connection laplacian
C.-Y. Lin and H.-T. Wu · 2016
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EMPIAR: A public archive for raw electron microscopy image data
A. Ludin, P. K. Korir, J. Salavert-Torres, G. J. Kleywegt, and A. Patwardhan · 2016
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Principles of cryo-EM single-particle image processing
F. J. Sigworth · 2016
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Xmipp 3.0: an improved software suite for image processing in electron microscopy
J. De la Rosa-Trevín, J. Otón, R. Marabini, A. Zaldivar, J. Vargas, J. Carazo, and C. Sorzano · 2013
Cited alongside, same era.
Structure of the TRPV1 ion channel determined by electron cryo-microscopy
M. Liao, E. Cao, D. Julius, and Y. Cheng · 2013
Cited alongside, same era.
Likelihood-based classification of cryo-EM images using FREALIGN
D. Lyumkis, A. F. Brilot, D. L. Theobald, and N. Grigorieff · 2013
Cited alongside, same era.
Exact and stable recovery of rotations for robust synchronization
L. Wang and A. Singer · 2013
Cited alongside, same era.
Orientation determination of cryo-EM images using least unsquared deviations
L. Wang, A. Singer, and Z. Wen · 2013
Cited alongside, same era.
Fourier–bessel rotational invariant eigenimages
Z. Zhao and A. Singer · 2013
Cited alongside, same era.
Fast steerable principal component analysis
Z. Zhao, Y. Shkolnisky, and A. Singer · 2016
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Steerable principal components for space-frequency localized images
B. Landa and Y. Shkolnisky · 2017
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Low dimensional manifold model for image processing
S. Osher, Z. Shi, and W. Zhu · 2017
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A tale of two bases: Local-nonlocal regularization on image patches with convolution framelets
R. Yin, T. Gao, Y. M. Lu, and I. Daubechies · 2017
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Performance analysis of plug-and-play admm: A graph signal processing perspective
S. H. Chan · 2018
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Apple picker: Automatic particle picking, a low-effort cryo-em framework
A. Heimowitz, J. Andén, and A. Singer · 2018
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The steerable graph laplacian and its application to filtering image data-sets
B. Landa and Y. Shkolnisky · 2018
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HIV-1 Nefs are cargo-sensitive AP-1 trimerization switches in tetherin and MHC-I downregulation
K. L. Morris, C. Z. Buffalo, C. M. Sturzel, E. Heusinger, F. Kirchhoff, X. Ren, and J. H. Hurley · 2018
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