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Complex models used to describe biological processes in epidemiology and ecology often have computationally intractable or expensive likelihoods.
An outline of the dynamics of animal populations
A. J. Nicholson · 1954
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Discrimination among mechanistic models
G. E. P. Box and W. J. Hill · 1967
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Coexistence in laboratory populations of paramecium aurelia and its predator didinium nasutum
L. S. Luckinbill · 1973
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A total entropy criterion for the dual problem of model discrimination and parameter estimation
D. M. Borth · 1975
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Patterns of dynamical behaviour in single-species populations
M. P. Hassell, J. H. Lawton, and R. M. May · 1976
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Exact stochastic simulation of coupled chemical reactions
D. T. Gillespie · 1977
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The Bayesian approach [with discussion and reply]
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Direct and indirect effects in microcosm communities of protists
S. P. Lawler · 1993
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Effects of basal resources, predation, and alternative prey in microcosm food chains
D. Balčiūnas and S. P. Lawler · 1995
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Scrambled net variance for integrals of smooth functions
A. B. Owen · 1997
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Expokit: A software package for computing matrix exponentials
R. B. Sidje · 1998
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Iterative Methods for Optimization
C. Kelley · 1999
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Laplace importance sampling for generalized linear mixed models
A. Y. C. Kuk · 1999
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Approximate accelerated stochastic simulation of chemically reacting systems
D. T. Gillespie · 2001
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Approximate Bayesian computation in population genetics
M. A. Beaumont, W. Zhang, and D. J. Balding · 2002
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Simulation methods for optimal experimental design in systems biology
D. Faller, U. Klingmüller, and J. Timmer · 2003
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Estimating expected information gains for experimental designs with application to the random fatigue-limit model
K. J. Ryan · 2003
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Understanding ecological concepts: The role of laboratory systems
M. B. Bonsall and M. P. Hassell · 2005
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Pattern Recognition and Machine Learning
C. M. Bishop · 2006
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Modelling predation on functional response
J. S. Fenlon and M. J. Faddy · 2006
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The effect of vaccination on foot and mouth disease virus transmission among dairy cows
K. Orsel, M. de Jong, A. Bouma, J. Stegeman, and A. Dekker · 2007
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A sequential Monte Carlo algorithm to incorporate model uncertainty in Bayesian sequential design
C. C. Drovandi, J. M. McGree, and A. N. Pettitt · 2014
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Statistical Methods for Complex Population Dynamics
M. Fasiolo · 2016
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Likelihood-free simulation-based optimal design with an application to spatial extremes
M. Hainy, W. G. Müller, and H. Wagner · 2016
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A pseudo-marginal sequential monte carlo algorithm for random effects models in Bayesian sequential design
J. M. McGree, C. C. Drovandi, G. White, and A. N. Pettitt · 2016
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On the efficient determination of optimal Bayesian experimental designs using ABC: A case study in optimal observation of epidemics
D. J. Price, N. G. Bean, J. V. Ross, and J. Tuke · 2016
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Flexible design and efficient implementation of adaptive dose-finding studies
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A. R. Cook, G. J. Gibson, and C. A. Gilligan · 2008
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ABC likelihood-free methods for model choice in Gibbs random fields
A. Grelaud, C. P. Robert, J.-M. Marin, F. Rodolphe, and J.-F. Taly · 2009
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Statistical inference for noisy nonlinear ecological dynamic systems
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A review of modern computational algorithms for Bayesian optimal design
E. G. Ryan, C. C. Drovandi, J. M. McGree, and A. N. Pettitt · 2016
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Developments of the total entropy utility function for the dual purpose of model discrimination and parameter estimation in Bayesian design
J. M. McGree · 2017
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Bayesian design of experiments using approximate coordinate exchange
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Variational Bayes with intractable likelihood
M. Tran, D. J. Nott, and R. Kohn · 2017
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randtoolbox: Generating and Testing Random Numbers , 2018
D. Christophe and S. Petr · 2018
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Improving the efficiency of fully Bayesian optimal design of experiments using randomised quasi-Monte Carlo
C. C. Drovandi and M.-N. Tran · 2018
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An extended empirical saddlepoint approximation for intractable likelihoods
M. Fasiolo, S. N. Wood, F. Hartig, and M. V. Bravington · 2018
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Variational Bayes with synthetic likelihood
V. M. H. Ong, D. J. Nott, M.-N. Tran, S. A. Sisson, and C. C. Drovandi · 2018
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Bayesian synthetic likelihood
L. F. Price, C. C. Drovandi, A. Lee, and D. J. Nott · 2018
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Bayesian design of experiments for intractable likelihood models using coupled auxiliary models and multivariate emulation
A. M. Overstall and J. M. McGree · 2019
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