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Background.
Conformation of polypeptides and proteins
GN t Ramachandran and V Sasisekharan · 1968
Earlier work this paper cites.
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
Wolfgang Kabsch and Christian Sander · 1983
Earlier work this paper cites.
Circular clustering by minimum message length of protein dihedral angles
David L Dowe, Lloyd Allison, Trevor I Dix, Lawrence Hunter, Chris S Wallace, and Timothy Edgoose · 1995
Earlier work this paper cites.
The protein data bank
Helen M Berman, John Westbrook, Zukang Feng, Gary Gilliland, Talapady N Bhat, Helge Weissig, Ilya N Shindyalov, and Philip E Bourne · 2000
Earlier work this paper cites.
Fold prediction of helical proteins using torsion angle dynamics and predicted restraints
Chao Zhang, Jingtong Hou, and Sung-Hou Kim · 2002
Earlier work this paper cites.
Probabilistic model for two dependent circular variables
Harshinder Singh, Vladimir Hnizdo, and Eugene Demchuk · 2002
Earlier work this paper cites.
Protein backbone angle prediction with machine learning approaches
Rui Kuang, Christina S Leslie, and An-Suei Yang · 2004
Earlier work this paper cites.
Local propensities and statistical potentials of backbone dihedral angles in proteins
Marcos R Betancourt and Jeffrey Skolnick · 2004
Earlier work this paper cites.
Relationships between amino acid sequence and backbone torsion angle preferences
O Keskin, D Yuret, A Gursoy, M Turkay, and B Erman · 2004
Earlier work this paper cites.
Protein homology detection by hmm–hmm comparison
Johannes Söding · 2004
Earlier work this paper cites.
Protein secondary structure prediction with dihedral angles
Matthew J Wood and Jonathan D Hirst · 2005
Earlier work this paper cites.
Building native protein conformation from highly approximate backbone torsion angles
Haipeng Gong, Patrick J Fleming, and George D Rose · 2005
Earlier work this paper cites.
Helix, sheet, and polyproline ii frequencies and strong nearest neighbor effects in a restricted coil library
Abhishek K Jha, Andres Colubri, Muhammad H Zaman, Shohei Koide, Tobin R Sosnick, and Karl F Freed · 2005
Earlier work this paper cites.
A method for evaluating the structural quality of protein models by using higher-order φ \varphi – ψ \psi pairs scoring
Gregory E Sims and Sung-Hou Kim · 2006
Earlier work this paper cites.
Minimalist representations and the importance of nearest neighbor effects in protein folding simulations
Andrés Colubri, Abhishek K Jha, Min-yi Shen, Andrej Sali, R Stephen Berry, Tobin R Sosnick, and Karl F Freed · 2006
Earlier work this paper cites.
Support vector machines for prediction of dihedral angle regions
Olav Zimmermann and Ulrich HE Hansmann · 2006
Earlier work this paper cites.
Protein bioinformatics and mixtures of bivariate von mises distributions for angular data
Kanti V Mardia, Charles C Taylor, and Ganesh K Subramaniam · 2007
Earlier work this paper cites.
Tali: local alignment of protein structures using backbone torsion angles
Xijiang Miao, Peter J Waddell, and Homayoun Valafar · 2008
Earlier work this paper cites.
Sp 5: improving protein fold recognition by using torsion angle profiles and profile-based gap penalty model
Wei Zhang, Song Liu, and Yaoqi Zhou · 2008
Cited alongside, same era.
Fragment-hmm: A new approach to protein structure prediction
Shuai Cheng Li, Dongbo Bu, Jinbo Xu, and Ming Li · 2008
Cited alongside, same era.
Anglor: a composite machine-learning algorithm for protein backbone torsion angle prediction
Sitao Wu and Yang Zhang · 2008
Cited alongside, same era.
Real-value prediction of backbone torsion angles
Bin Xue, Ofer Dor, Eshel Faraggi, and Yaoqi Zhou · 2008
Cited alongside, same era.
Predicting continuous local structure and the effect of its substitution for secondary structure in fragment-free protein structure prediction
Eshel Faraggi, Yuedong Yang, Shesheng Zhang, and Yaoqi Zhou · 2009
Cited alongside, same era.
Bayesian methods in structural bioinformatics
Thomas Hamelryck, Kanti Mardia, and Jesper Ferkinghoff-Borg · 2012
Later among the works it cites.
Emerging methods in protein co-evolution
David De Juan, Florencio Pazos, and Alfonso Valencia · 2013
Later among the works it cites.
Accurate prediction of protein dihedral angles through conditional random field
Shesheng Zhang, Shengping Jin, and Bin Xue · 2013
Later among the works it cites.
Predicting backbone c α \alpha angles and dihedrals from protein sequences by stacked sparse auto-encoder deep neural network
James Lyons, Abdollah Dehzangi, Rhys Heffernan, Alok Sharma, Kuldip Paliwal, Abdul Sattar, Yaoqi Zhou, and Yuedong Yang · 2014
Later among the works it cites.
Evaluation of protein dihedral angle prediction methods
Harinder Singh, Sandeep Singh, and Gajendra PS Raghava · 2014
Later among the works it cites.
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Eshel Faraggi, Bin Xue, and Yaoqi Zhou · 2009
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Blast+: architecture and applications
Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason Papadopoulos, Kevin Bealer, and Thomas L Madden · 2009
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Prediction of backbone dihedral angles and protein secondary structure using support vector machines
Petros Kountouris and Jonathan D Hirst · 2009
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Improving prediction of secondary structure, local backbone angles, and solvent accessible surface area of proteins by iterative deep learning
Rhys Heffernan, Kuldip Paliwal, James Lyons, Abdollah Dehzangi, Alok Sharma, Jihua Wang, Abdul Sattar, Yuedong Yang, and Yaoqi Zhou · 2015
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Deepcnf-d: predicting protein order/disorder regions by weighted deep convolutional neural fields
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Going deeper with convolutions
Christian Szegedy, Wei Liu, Yangqing Jia, Pierre Sermanet, Scott Reed, Dragomir Anguelov, Dumitru Erhan, Vincent Vanhoucke, and Andrew Rabinovich · 2015
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Training very deep networks
Rupesh K Srivastava, Klaus Greff, and Jürgen Schmidhuber · 2015
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Improving the performance of the plb index for ligand-binding site prediction using dihedral angles and the solvent-accessible surface area
Chen Cao and Shutan Xu · 2016
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Protein secondary structure prediction using deep convolutional neural fields
Sheng Wang, Jian Peng, Jianzhu Ma, and Jinbo Xu · 2016
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Predicting the errors of predicted local backbone angles and non-local solvent-accessibilities of proteins by deep neural networks
Jianzhao Gao, Yuedong Yang, and Yaoqi Zhou · 2016
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Deep residual learning for image recognition
Kaiming He, Xiangyu Zhang, Shaoqing Ren, and Jian Sun · 2016
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