Variational auto-encoding of protein sequences

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2011

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2013

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2014

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R. Gómez-Bombarelli, D. Duvenaud, J. M. Hernández-Lobato, J. Aguilera-Iparraguirre, T. D. Hirzel, R. P. Adams, and A. Aspuru-Guzik, “Automatic chemical design using a data-driven continuous representation of molecules,” arXiv preprint arXiv:1610.02415

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2016

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T. A. Hopf, J. B. Ingraham, F. J. Poelwijk, C. P. Schärfe, M. Springer, C. Sander, and D. S. Marks, “Mutation effects predicted from sequence co-variation,” Nature biotechnology

2017

Closest in time.

J. Ingraham and D. Marks, “Variational inference for sparse and undirected models,” in International Conference on Machine Learning

2017

Closest in time.

A. J. Riesselman, J. B. Ingraham, and D. S. Marks, “Deep generative models of genetic variation capture mutation effects,” arXiv preprint arXiv:1712.06527

Original