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We show that the QCD color transparency of higher-twist contributions to inclusive hadroproduction cross sections, where baryons are produced directly in a short-distance subprocess, can explain several remarkable features of high-$p_T$ baryon production in heavy ion collisions which have recently been observed at RHIC: (a) the anomalous increase of the proton-to-pion ratio with centrality (b): the increased power-law fall-off at fixed $x_T=2p_T/ \sqrt s$ of the charged particle production cross section in high centrality nuclear collisions, and (c): the anomalous decrease of the number of same-side hadrons produced in association with a proton trigger as the centrality increases.
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