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Diagnosing diseases through histopathology whole slide images (WSIs) is fundamental in modern pathology but is challenged by the gigapixel scale and complexity of WSIs.
An experimental study of pathologist’s navigation patterns in virtual microscopy
Lucia Roa-Peña, Francisco Gómez, and Eduardo Romero · 2010
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Slide navigation patterns among pathologists with long experience of digital review
Jesper Molin, Morten Fjeld, Claudia Mello-Thoms, and Claes Lundström · 2015
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U-net: Convolutional networks for biomedical image segmentation
Olaf Ronneberger, Philipp Fischer, and Thomas Brox · 2015
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Achieving consensus for the histopathologic diagnosis of melanocytic lesions: use of the modified delphi method
Patricia A Carney, Lisa M Reisch, Michael W Piepkorn, Raymond L Barnhill, David E Elder, Stevan Knezevich, Berta M Geller, Gary Longton, and Joann G Elmore · 2016
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Pathologists’ diagnosis of invasive melanoma and melanocytic proliferations: observer accuracy and reproducibility study
Joann G Elmore, Raymond L Barnhill, David E Elder, Gary M Longton, Margaret S Pepe, Lisa M Reisch, Patricia A Carney, Linda J Titus, Heidi D Nelson, Tracy Onega, et al · 2017
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Squeeze-and-excitation networks
Jie Hu, Li Shen, and Gang Sun · 2018
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Characterizing diagnostic search patterns in digital breast pathology: scanners and drillers
Ezgi Mercan, Linda G Shapiro, Tad T Brunyé, Donald L Weaver, and Joann G Elmore · 2018
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Accuracy of digital pathologic analysis vs traditional microscopy in the interpretation of melanocytic lesions
Tracy Onega, Raymond L Barnhill, Michael W Piepkorn, Gary M Longton, David E Elder, Martin A Weinstock, Stevan R Knezevich, Lisa M Reisch, Patricia A Carney, Heidi D Nelson, et al · 2018
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Mobilenetv2: Inverted residuals and linear bottlenecks
Mark Sandler, Andrew Howard, Menglong Zhu, Andrey Zhmoginov, and Liang-Chieh Chen · 2018
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Language models are unsupervised multitask learners
Alec Radford, Jeff Wu, Rewon Child, David Luan, Dario Amodei, and Ilya Sutskever · 2019
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High-performance medicine: the convergence of human and artificial intelligence
Eric J Topol · 2019
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Exploring the limits of transfer learning with a unified text-to-text transformer
Colin Raffel, Noam Shazeer, Adam Roberts, Katherine Lee, Sharan Narang, Michael Matena, Yanqi Zhou, Wei Li, and Peter J Liu · 2020
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Lora: Low-rank adaptation of large language models, 2021
Edward J. Hu, Yelong Shen, Phillip Wallis, Zeyuan Allen-Zhu, Yuanzhi Li, Shean Wang, Lu Wang, and Weizhu Chen · 2021
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Transmil: Transformer based correlated multiple instance learning for whole slide image classification
Zhuchen Shao, Hao Bian, Yang Chen, Yifeng Wang, Jian Zhang, Xiangyang Ji, et al · 2021
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Scaling vision transformers to gigapixel images via hierarchical self-supervised learning
Richard J Chen, Chengkuan Chen, Yicong Li, Tiffany Y Chen, Andrew D Trister, Rahul G Krishnan, and Faisal Mahmood · 2022
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An analysis of pathologists’ viewing processes as they diagnose whole slide digital images
Fatemeh Ghezloo, Pin-Chieh Wang, Kathleen F Kerr, Tad T Brunyé, Trafton Drew, Oliver H Chang, Lisa M Reisch, Linda G Shapiro, and Joann G Elmore · 2022
Cited alongside, same era.
Multi-modal masked autoencoders learn compositional histopathological representations
Wisdom Oluchi Ikezogwo, Mehmet Saygin Seyfioglu, and Linda Shapiro · 2022
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End-to-end diagnosis of breast biopsy images with transformers
Sachin Mehta, Ximing Lu, Wenjun Wu, Donald Weaver, Hannaneh Hajishirzi, Joann G Elmore, and Linda G Shapiro · 2022
Cited alongside, same era.
A graph-transformer for whole slide image classification
Yi Zheng, Rushin H Gindra, Emily J Green, Eric J Burks, Margrit Betke, Jennifer E Beane, and Vijaya B Kolachalama · 2022
Cited alongside, same era.
Improving factuality and reasoning in language models through multiagent debate
Yilun Du, Shuang Li, Antonio Torralba, Joshua B Tenenbaum, and Igor Mordatch · 2023
Robust roi detection in whole slide images guided by pathologists’ viewing patterns
Fatemeh Ghezloo, Oliver H. Chang, Stevan R. Knezevich, Kristin C. Shaw, Kia Gianni Thigpen, Lisa M. Reisch, Linda G. Shapiro, and Joann G. Elmore · 2024
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Llm multi-agent systems: Challenges and open problems
Shanshan Han, Qifan Zhang, Yuhang Yao, Weizhao Jin, Zhaozhuo Xu, and Chaoyang He · 2024
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Llm-based multi-agent systems for software engineering: Vision and the road ahead
Junda He, Christoph Treude, and David Lo · 2024
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Jen-tse Huang, Eric John Li, Man Ho Lam, Tian Liang, Wenxuan Wang, Youliang Yuan, Wenxiang Jiao, Xing Wang, Zhaopeng Tu, and Michael R Lyu · 2024
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Cited alongside, same era.
Augmenting pathologists with navipath: design and evaluation of a human-ai collaborative navigation system
Hongyan Gu, Chunxu Yang, Mohammad Haeri, Jing Wang, Shirley Tang, Wenzhong Yan, Shujin He, Christopher Kazu Williams, Shino Magaki, and Xiang’Anthony’ Chen · 2023
Cited alongside, same era.
Higt: Hierarchical interaction graph-transformer for whole slide image analysis
Ziyu Guo, Weiqin Zhao, Shujun Wang, and Lequan Yu · 2023
Cited alongside, same era.
Quilt-1m: One million image-text pairs for histopathology
Wisdom Oluchi Ikezogwo, Mehmet Saygin Seyfioglu, Fatemeh Ghezloo, Dylan Stefan Chan Geva, Fatwir Sheikh Mohammed, Pavan Kumar Anand, Ranjay Krishna, and Linda Shapiro · 2023
Cited alongside, same era.
Camel: communicative agents for” mind” exploration of large scale language model society.(2023)
G Li, HAAK Hammoud, H Itani, D Khizbullin, and B Ghanem · 2023
Cited alongside, same era.
Improved baselines with visual instruction tuning
Haotian Liu, Chunyuan Li, Yuheng Li, and Yong Jae Lee · 2023
Cited alongside, same era.
Llama: Open and efficient foundation language models
Hugo Touvron, Thibaut Lavril, Gautier Izacard, Xavier Martinet, Marie-Anne Lachaux, Timothée Lacroix, Baptiste Rozière, Naman Goyal, Eric Hambro, Faisal Azhar, et al · 2023
Cited alongside, same era.
Pathalign: A vision-language model for whole slide images in histopathology
Faruk Ahmed, Andrew Sellergren, Lin Yang, Shawn Xu, Boris Babenko, Abbi Ward, Niels Olson, Arash Mohtashamian, Yossi Matias, Greg S Corrado, et al · 2024
Cited alongside, same era.
Aaron Hurst, Adam Lerer, Adam P Goucher, Adam Perelman, Aditya Ramesh, Aidan Clark, AJ Ostrow, Akila Welihinda, Alan Hayes, Alec Radford, et al · 2024
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Quilt-1m: One million image-text pairs for histopathology
Wisdom Ikezogwo, Saygin Seyfioglu, Fatemeh Ghezloo, Dylan Geva, Fatwir Sheikh Mohammed, Pavan Kumar Anand, Ranjay Krishna, and Linda Shapiro · 2024
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Semantics-aware attention guidance for diagnosing whole slide images
Kechun Liu, Wenjun Wu, Joann G Elmore, and Linda G Shapiro · 2024
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Quilt-llava: Visual instruction tuning by extracting localized narratives from open-source histopathology videos
Mehmet Saygin Seyfioglu, Wisdom O Ikezogwo, Fatemeh Ghezloo, Ranjay Krishna, and Linda Shapiro · 2024
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Pathgen-1.6 m: 1.6 million pathology image-text pairs generation through multi-agent collaboration
Yuxuan Sun, Yunlong Zhang, Yixuan Si, Chenglu Zhu, Zhongyi Shui, Kai Zhang, Jingxiong Li, Xingheng Lyu, Tao Lin, and Lin Yang · 2024
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A foundation model for clinical-grade computational pathology and rare cancers detection
Eugene Vorontsov, Alican Bozkurt, Adam Casson, George Shaikovski, Michal Zelechowski, Kristen Severson, Eric Zimmermann, James Hall, Neil Tenenholtz, Nicolo Fusi, et al · 2024
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Autogen: Enabling next-gen llm applications via multi-agent conversations
Qingyun Wu, Gagan Bansal, Jieyu Zhang, Yiran Wu, Beibin Li, Erkang Zhu, Li Jiang, Xiaoyun Zhang, Shaokun Zhang, Jiale Liu, et al · 2024
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A whole-slide foundation model for digital pathology from real-world data
Hanwen Xu, Naoto Usuyama, Jaspreet Bagga, Sheng Zhang, Rajesh Rao, Tristan Naumann, Cliff Wong, Zelalem Gero, Javier González, Yu Gu, et al · 2024
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A foundation model for generalizable cancer diagnosis and survival prediction from histopathological images
Zhaochang Yang, Ting Wei, Ying Liang, Xin Yuan, Ruitian Gao, Yujia Xia, Jie Zhou, Yue Zhang, and Zhangsheng Yu · 2024
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Qifeng Zhou, Wenliang Zhong, Yuzhi Guo, Michael Xiao, Hehuan Ma, and Junzhou Huang · 2024
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