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Structure determination is essential to a mechanistic understanding of diseases and the development of novel therapeutics.
“A solution for the best rotation to relate two sets of vectors” _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1107/S0567739476001873
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“A solution for the best rotation to relate two sets of vectors” _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1107/S0567739476001873
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“Multiple sequence alignment”
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“Least-squares estimation of transformation parameters between two point patterns” Conference Name: IEEE Transactions on Pattern Analysis and Machine Intelligence
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“Least-squares estimation of transformation parameters between two point patterns” Conference Name: IEEE Transactions on Pattern Analysis and Machine Intelligence
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“Pymol: An open-source molecular graphics tool”
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“Pymol: An open-source molecular graphics tool”
Warren DeLano · 2002
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“Improved protein–ligand docking using GOLD” _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/prot.10465
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“CAPRI: a critical assessment of predicted interactions”
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“Improved protein–ligand docking using GOLD” _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/prot.10465
Marcel. Verdonk et al · 2003
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“CAPRI: a critical assessment of predicted interactions”
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“Longformer: The Long-Document Transformer” arXiv:2004.05150 [cs] version: 2
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“Longformer: The Long-Document Transformer” arXiv:2004.05150 [cs] version: 2
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“Query-Key Normalization for Transformers” arXiv:2010.04245
Alex Henry, Prudhvi Dachapally, Shubham Pawar and Yuxuan Chen · 2010
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“Query-Key Normalization for Transformers” arXiv:2010.04245
Alex Henry, Prudhvi Dachapally, Shubham Pawar and Yuxuan Chen · 2010
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“Query-Key Normalization for Transformers” arXiv:2010.04245
Alex Henry, Prudhvi Dachapally, Shubham Pawar and Yuxuan Chen · 2010
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“Query-Key Normalization for Transformers” arXiv:2010.04245
Alex Henry, Prudhvi Dachapally, Shubham Pawar and Yuxuan Chen · 2010
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“Accelerated Profile HMM Searches” Publisher: Public Library of Science
Sean. Eddy · 2011
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“Accelerated Profile HMM Searches” Publisher: Public Library of Science
Sean. Eddy · 2011
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“lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests”
Valerio Mariani, Marco Biasini, Alessandro Barbato and Torsten Schwede · 2013
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“lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests”
Valerio Mariani, Marco Biasini, Alessandro Barbato and Torsten Schwede · 2013
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Baris. Suzek et al · 2015
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“UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches”
Baris. Suzek et al · 2015
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“Layer Normalization” arXiv:1607.06450 [stat]
Jimmy Ba, Jamie Kiros and Geoffrey. Hinton · 2016
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“Layer Normalization” arXiv:1607.06450 [stat]
Jimmy Ba, Jamie Kiros and Geoffrey. Hinton · 2016
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“Lessons learned from comparing molecular dynamics engines on the SAMPL5 dataset”
Michael. Shirts et al · 2017
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“Lessons learned from comparing molecular dynamics engines on the SAMPL5 dataset”
Michael. Shirts et al · 2017
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“Representation Learning with Contrastive Predictive Coding”
Aäron van Oord, Yazhe Li and Oriol Vinyals · 2018
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“Representation Learning with Contrastive Predictive Coding”
Aäron van Oord, Yazhe Li and Oriol Vinyals · 2018
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“HH-suite3 for fast remote homology detection and deep protein annotation”
Martin Steinegger et al · 2019
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“Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold” Publisher: Nature Publishing Group
Martin Steinegger, Milot Mirdita and Johannes Söding · 2019
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“Root Mean Square Layer Normalization”
Biao Zhang and Rico Sennrich · 2019
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“HH-suite3 for fast remote homology detection and deep protein annotation”
Martin Steinegger et al · 2019
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“Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold” Publisher: Nature Publishing Group
Martin Steinegger, Milot Mirdita and Johannes Söding · 2019
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“Root Mean Square Layer Normalization”
Biao Zhang and Rico Sennrich · 2019
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John Jumper et al · 2021
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Richard Evans et al · 2021
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Anders. Christensen et al · 2021
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“Highly accurate protein structure prediction with AlphaFold” Publisher: Nature Publishing Group
John Jumper et al · 2021
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“Highly accurate protein structure prediction with AlphaFold” Publisher: Nature Publishing Group
John Jumper et al · 2021
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“Protein complex prediction with AlphaFold-Multimer” Pages: 2021.10.04.463034 Section: New Results
Richard Evans et al · 2021
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Anders. Christensen et al · 2021
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“Highly accurate protein structure prediction with AlphaFold” Publisher: Nature Publishing Group
John Jumper et al · 2021
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Milot Mirdita et al · 2022
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Yaron Lipman et al · 2022
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Xingchao Liu, Chengyue Gong and Qiang Liu · 2022
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