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The process of quantifying and analyzing animal behavior involves translating the naturally occurring descriptive language of their actions into machine-readable code.
The foundations of ethology
Konrad Lorenz · 1981
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Cooper, heron, and heward’s applied behavior analysis (2nd ed.): Checkered flag for students and professors, yellow flag for the field
Patrick C. Friman · 2010
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Jaaba: interactive machine learning for automatic annotation of animal behavior
Mayank Kabra, Alice Robie, Marta Rivera-Alba, Steve Branson, and Kristin Branson · 2013
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Toward a science of computational ethology
David J Anderson and Pietro Perona · 2014
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Commonly used animal models
Debra Hickman, J. Johnson, Tracy H. Vemulapalli, J.R. Crisler, and R. Shepherd · 2016
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Mask r-cnn
Kaiming He, Georgia Gkioxari, Piotr Dollár, and Ross Girshick · 2017
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Deeplabcut: markerless pose estimation of user-defined body parts with deep learning
Alexander Mathis, Pranav Mamidanna, Kevin M Cury, Taiga Abe, Venkatesh N Murthy, Mackenzie Weygandt Mathis, and Matthias Bethge · 2018
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Live mouse tracker: real-time behavioral analysis of groups of mice
Fabrice de Chaumont, Elodie Ey, Nicolas Torquet, Thibault Lagache, Stéphane Dallongeville, Albane Imbert, Thierry Legou, Anne-Marie Le Sourd, Philippe Faure, Thomas Bourgeron, and Jean-Christophe Olivo-Marin · 2018
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Bert: Pre-training of deep bidirectional transformers for language understanding
Jacob Devlin, Ming-Wei Chang, Kenton Lee, and Kristina Toutanova · 2018
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Umap: Uniform manifold approximation and projection for dimension reduction
Leland McInnes and John Healy · 2018
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Fast animal pose estimation using deep neural networks
Talmo D Pereira, Diego E Aldarondo, Lindsay Willmore, Mikhail Kislin, Samuel S-H Wang, Mala Murthy, and Joshua W Shaevitz · 2019
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eztrack: An open-source video analysis pipeline for the investigation of animal behavior
Zachary T. Pennington, Zhe Dong, Yu Feng, Lauren M. Vetere, Lucia Page-Harley, Tristan Shuman, and Denise J. Cai · 2019
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Behavenet: nonlinear embedding and bayesian neural decoding of behavioral videos
Eleanor Batty, Matthew R Whiteway, Shreya Saxena, Dan Biderman, Taiga Abe, Simon Musall, Winthrop F. Gillis, Jeffrey E. Markowitz, Anne K. Churchland, John P. Cunningham, Sandeep Robert Datta, Scott W. Linderman, and Liam Paninski · 2019
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Real-time analysis of the behaviour of groups of mice via a depth-sensing camera and machine learning
Fabrice De Chaumont, Elodie Ey, Nicolas Torquet, Thibault Lagache, Stéphane Dallongeville, Albane Imbert, Thierry Legou, Anne-Marie Le Sourd, Philippe Faure, Thomas Bourgeron, et al · 2019
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B-soid, an open-source unsupervised algorithm for identification and fast prediction of behaviors
Alexander I. Hsu and Eric A. Yttri · 2019
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Deep learning tools for the measurement of animal behavior in neuroscience
Mackenzie Weygandt Mathis and Alexander Mathis · 2020
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Deep learning-based behavioral analysis reaches human accuracy and is capable of outperforming commercial solutions
Oliver Sturman, Lukas von Ziegler, Christa Schläppi, Furkan Akyol, Mattia Privitera, Daria Slominski, Christina Grimm, Laetitia Thieren, Valerio Zerbi, Benjamin Grewe, et al · 2020
Cited alongside, same era.
Simple behavioral analysis (simba)–an open source toolkit for computer classification of complex social behaviors in experimental animals
Simon RO Nilsson, Nastacia L Goodwin, Jia Jie Choong, Sophia Hwang, Hayden R Wright, Zane C Norville, Xiaoyu Tong, Dayu Lin, Brandon S Bentzley, Neir Eshel, et al · 2020
Cited alongside, same era.
Deep-learning based identification, tracking, pose estimation, and behavior classification of interacting primates and mice in complex environments
Markus Marks, Qiuhan Jin, Oliver Sturman, Lukas M. von Ziegler, Sepp Kollmorgen, Wolfger von der Behrens, Valerio Mante, Johannes Bohacek, and Mehmet Fatih Yanik · 2020
Cited alongside, same era.
Exploring the limits of transfer learning with a unified text-to-text transformer
Colin Raffel, Noam Shazeer, Adam Roberts, Katherine Lee, Sharan Narang, Michael Matena, Yanqi Zhou, Wei Li, and Peter J Liu · 2020
Cited alongside, same era.
Visual programming: Compositional visual reasoning without training
Tanmay Gupta and Aniruddha Kembhavi · 2022
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Learning behavior representations through multi-timescale bootstrapping
Mehdi Azabou, Michael Mendelson, Maks Sorokin, Shantanu Thakoor, Nauman Ahad, Carolina Urzay, and Eva L. Dyer · 2022
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Documentation matters: Human-centered ai system to assist data science code documentation in computational notebooks
April Yi Wang, Dakuo Wang, Jaimie Drozdal, Michael Muller, Soya Park, Justin D Weisz, Xuye Liu, Lingfei Wu, and Casey Dugan · 2022
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Training language models with memory augmentation
Zexuan Zhong, Tao Lei, and Danqi Chen · 2022
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Language models are few-shot learners
Tom Brown, Benjamin Mann, Nick Ryder, Melanie Subbiah, Jared D Kaplan, Prafulla Dhariwal, Arvind Neelakantan, Pranav Shyam, Girish Sastry, Amanda Askell, et al · 2020
Cited alongside, same era.
Identifying behavioral structure from deep variational embeddings of animal motion
Kevin Luxem, Petra Mocellin, Falko Fuhrmann, Johannes Kürsch, Stefan Remy, and Pavol Bauer · 2020
Cited alongside, same era.
DLC2Kinematics: a post-deeplabcut module for kinematic analysis
Mackenzie Mathis, Jessy Lauer, Tanmay Nath, Kai Sandbink, Michael Beauzile, Sébastien Hausmann, Steffen Schneider, and Alexander Mathis · 2020
Cited alongside, same era.
Deepethogram, a machine learning pipeline for supervised behavior classification from raw pixels
James P Bohnslav, Nivanthika K Wimalasena, Kelsey J Clausing, Yu Y Dai, David A Yarmolinsky, Tomás Cruz, Adam D Kashlan, M Eugenia Chiappe, Lauren L Orefice, Clifford J Woolf, et al · 2021
Cited alongside, same era.
The mouse action recognition system (mars) software pipeline for automated analysis of social behaviors in mice
Cristina Segalin, Jalani Williams, Tomomi Karigo, May Hui, Moriel Zelikowsky, Jennifer J Sun, Pietro Perona, David J Anderson, and Ann Kennedy · 2021
Cited alongside, same era.
Task programming: Learning data efficient behavior representations
Jennifer J Sun, Ann Kennedy, Eric Zhan, David J Anderson, Yisong Yue, and Pietro Perona · 2021
Cited alongside, same era.
Ai chains: Transparent and controllable human-ai interaction by chaining large language model prompts
Tongshuang Sherry Wu, Michael Terry, and Carrie J. Cai · 2021
Cited alongside, same era.
The mabe22 benchmarks for representation learning of multi-agent behavior
Jennifer J Sun, Andrew Ulmer, Dipam Chakraborty, Brian Geuther, Edward Hayes, Heng Jia, Vivek Kumar, Zachary Partridge, Alice Robie, Catherine E Schretter, et al · 2022
Cited alongside, same era.
Alexander Kirillov, Eric Mintun, Nikhila Ravi, Hanzi Mao, Chloe Rolland, Laura Gustafson, Tete Xiao, Spencer Whitehead, Alexander C. Berg, Wan-Yen Lo, Piotr Dollár, and Ross Girshick · 2023
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Superanimal models pretrained for plug-and-play analysis of animal behavior, 2023
Shaokai Ye, Anastasiia Filippova, Jessy Lauer, Maxime Vidal, Steffen Schneider, Tian Qiu, Alexander Mathis, and Mackenzie Weygandt Mathis · 2023
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Vipergpt: Visual inference via python execution for reasoning
Dídac Surís, Sachit Menon, and Carl Vondrick · 2023
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Hugginggpt: Solving ai tasks with chatgpt and its friends in huggingface
Yongliang Shen, Kaitao Song, Xu Tan, Dongsheng Li, Weiming Lu, and Yueting Zhuang · 2023
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Generative agents: Interactive simulacra of human behavior
Joon Sung Park, Joseph C O’Brien, Carrie J Cai, Meredith Ringel Morris, Percy Liang, and Michael S Bernstein · 2023
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Learnable latent embeddings for joint behavioural and neural analysis
Steffen Schneider, Jin Hwa Lee, and Mackenzie Weygandt Mathis · 2023
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Ethics of large language models in medicine and medical research
Hanzhou Li, John T. Moon, Saptarshi Purkayastha, Leo Anthony Celi, Hari Trivedi, and Judy Wawira Gichoya · 2023
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Augmenting language models with long-term memory
Weizhi Wang, Li Dong, Hao Cheng, Xiaodong Liu, Xifeng Yan, Jianfeng Gao, and Furu Wei · 2023
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Gpt-4 technical report, 2023
OpenAI · 2023
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Introducing claude, 2023
Anthropic · 2023
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Large language models as tool makers
Tianle Cai, Xuezhi Wang, Tengyu Ma, Xinyun Chen, and Denny Zhou · 2023
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