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The medical imaging community generates a wealth of datasets, many of which are openly accessible and annotated for specific diseases and tasks such as multi-organ or lesion segmentation.
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Ronneberger, O., Fischer, P., Brox, T.: U-net: Convolutional networks for biomedical image segmentation. In: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015. Lecture Notes in Computer Science, Springer International Publishing (2015)
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Roth, H.R., Lu, L., Farag, A., Shin, H.C., Liu, J., Turkbey, E.B., Summers, R.M.: Deeporgan: Multi-level deep convolutional networks for automated pancreas segmentation. In: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015. pp. 556–564. Springer International Publishing (2015)
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Gibson, E., Giganti, F., Hu, Y., Bonmati, E., Bandula, S., Gurusamy, K., Davidson, B., Pereira, S.P., Clarkson, M.J., Barratt, D.C.: Automatic multi-organ segmentation on abdominal ct with dense v-networks. IEEE Transactions on Medical Imaging 37
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Dmitriev, K., Kaufman, A.E.: Learning multi-class segmentations from single-class datasets. In: Conference on Computer Vision and Pattern Recognition (CVPR) (2019)
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Roulet, N., Slezak, D.F., Ferrante, E.: Joint learning of brain lesion and anatomy segmentation from heterogeneous datasets. In: Proceedings of The 2nd International Conference on Medical Imaging with Deep Learning (2019)
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Zhou, Y., Li, Z., Bai, S., Chen, X., Han, M., Wang, C., Fishman, E., Yuille, A.: Prior-aware neural network for partially-supervised multi-organ segmentation. In: 2019 IEEE/CVF International Conference on Computer Vision (ICCV) (2019)
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Fang, X., Yan, P.: Multi-organ segmentation over partially labeled datasets with multi-scale feature abstraction. IEEE Transactions on Medical Imaging (2020)
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2021
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Hatamizadeh, A., Tang, Y., Nath, V., Yang, D., Myronenko, A., Landman, B., Roth, H.R., Xu, D.: Unetr: Transformers for 3d medical image segmentation. In: Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision (WACV). pp. 574–584 (January 2022)
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Kumar, A., Raghunathan, A., Jones, R., Ma, T., Liang, P.: Fine-tuning can distort pretrained features and underperform out-of-distribution. arxiv.2202.10054 (2022)
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Fidon, L., Aertsen, M., Emam, D., Mufti, N., Guffens, F., Deprest, T., Demaerel, P., David, A.L., Melbourne, A., et al.: Label-set loss functions for partial supervision: Application to fetal brain 3d MRI parcellation. In: Medical Image Computing and Computer Assisted Intervention (2021)
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Filbrandt, G., Kamnitsas, K., Bernstein, D., Taylor, A., Glocker, B.: Learning from partially overlapping labels: Image segmentation under annotation shift. In: Domain Adaptation and Representation Transfer, and Affordable Healthcare and AI for Resource Diverse Global Health. Springer International Publishing (2021)
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Isensee, F., Jaeger, P.F., Kohl, S.A.A., Petersen, J., Maier-Hein, K.H.: nnU-net: a self-configuring method for deep learning-based biomedical image segmentation. Nature Methods 18(2)
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Shi, G., Xiao, L., Chen, Y., Zhou, S.K.: Marginal loss and exclusion loss for partially supervised multi-organ segmentation. Medical Image Analysis 70
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Zhang, J., Xie, Y., Xia, Y., Shen, C.: Dodnet: Learning to segment multi-organ and tumors from multiple partially labeled datasets. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) (June 2021)
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Zhou, Z., Sodha, V., Pang, J., Gotway, M.B., Liang, J.: Models genesis. Medical Image Analysis (2021)
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Antonelli, M., Reinke, A., Bakas, S., Farahani, K., Kopp-Schneider, A., Landman, B.A., Litjens, G., Menze, B., Ronneberger, O., Summers, R.M., et al: The medical segmentation decathlon. Nature Communications (2022)
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Landman, B., Xu, Z., Igelsias, J.E., Styner, M., Langerak, T., Klein, A.: Miccai multi-atlas labeling beyond the cranial vault–workshop and challenge (2015), https://www.synapse.org/#!Synapse:syn3193805/wiki/217760 (25/02/2022)
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Liu, P., Zheng, G.: Context-aware voxel-wise contrastive learning for label efficient multi-organ segmentation. In: Medical Image Computing and Computer Assisted Intervention (2022)
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Tang, Y., Yang, D., Li, W., Roth, H.R., Landman, B., Xu, D., Nath, V., Hatamizadeh, A.: Self-supervised pre-training of swin transformers for 3d medical image analysis. In: Conference on Computer Vision and Pattern Recognition (CVPR) (2022)
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Li, S., Wang, H., Meng, Y., Zhang, C., Song, Z.: Multi-organ segmentation: a progressive exploration of learning paradigms under scarce annotation (2023)
2023
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