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We study the D3-brane moduli dependence of the non-perturbative superpotential generated by the D7-brane gaugino condensation in a type IIB compactification on an orientifold of the elliptic Calabi-Yau threefold $\Bbb{P}_{[1,1,1,6,9]}[18].$ Building on the work of Ganor, in the weak coupling limit, we compute the D3-brane dependent one-loop pfaffian in the flat coordinates and find that the one-loop pfaffian is written as the Jacobi theta function.
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