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Consider the problem of determining the effect of a compound on a specific cell type.
Foundations of the parafac procedure: Models and conditions for an” explanatory” multimodal factor analysis
Richard A Harshman et al · 1970
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Inference and missing data
Donald B Rubin · 1976
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Parafac. tutorial and applications
Rasmus Bro · 1997
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Flexible multivariate imputation by MICE
Stef Van Buuren and Karin Oudshoorn · 1999
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Nir Friedman, Michal Linial, Iftach Nachman, and Dana Pe’er · 2000
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Missing value estimation methods for dna microarrays
Olga Troyanskaya, Michael Cantor, Gavin Sherlock, Pat Brown, Trevor Hastie, Robert Tibshirani, David Botstein, and Russ B Altman · 2001
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Lessons from the netflix prize challenge
Robert M Bell and Yehuda Koren · 2007
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Complete identification methods for the causal hierarchy
Ilya Shpitser and Judea Pearl · 2008
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Panel data models with interactive fixed effects
Jushan Bai · 2009
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Tensor decompositions and applications
Tamara G Kolda and Brett W Bader · 2009
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Synthetic control methods for comparative case studies: Estimating the effect of California’s tobacco control program
Alberto Abadie, Alexis Diamond, and Jens Hainmueller · 2010
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Missforest—non-parametric missing value imputation for mixed-type data
Daniel J Stekhoven and Peter Bühlmann · 2012
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Comparison of imputation methods for missing laboratory data in medicine
Akbar K Waljee, Ashin Mukherjee, Amit G Singal, Yiwei Zhang, Jeffrey Warren, Ulysses Balis, Jorge Marrero, Ji Zhu, and Peter DR Higgins · 2013
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Transportability from multiple environments with limited experiments: Completeness results
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Provable tensor factorization with missing data
Prateek Jain and Sewoong Oh · 2014
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Matrix estimation by universal singular value thresholding
Sourav Chatterjee · 2015
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Causal inference and the data-fusion problem
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Perturb-seq: dissecting molecular circuits with scalable single-cell RNA profiling of pooled genetic screens
Atray Dixit, Oren Parnas, Biyu Li, Jenny Chen, Charles P Fulco, Livnat Jerby-Arnon, Nemanja D Marjanovic, Danielle Dionne, Tyler Burks, Raktima Raychowdhury, et al · 2016
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Mapping the effects of drugs on the immune system
Brian A Kidd, Aleksandra Wroblewska, Mary R Boland, Judith Agudo, Miriam Merad, Nicholas P Tatonetti, Brian D Brown, and Joel T Dudley · 2016
On robustness of principal component regression
Anish Agarwal, Devavrat Shah, Dennis Shen, and Dogyoon Song · 2019
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Synthetic difference in differences
Dmitry Arkhangelsky, Susan Athey, David A Hirshberg, Guido W Imbens, and Stefan Wager · 2019
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Learning causal biological networks with the principle of Mendelian randomization
Md Badsha, Audrey Qiuyan Fu, et al · 2019
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The gctx format and cmap { \{ Py, R, M, J } \} packages: resources for optimized storage and integrated traversal of annotated dense matrices
Oana M Enache, David L Lahr, Ted E Natoli, Lev Litichevskiy, David Wadden, Corey Flynn, Joshua Gould, Jacob K Asiedu, Rajiv Narayan, and Aravind Subramanian · 2019
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Accurate prediction of biological assays with high-throughput microscopy images and convolutional networks
Markus Hofmarcher, Elisabeth Rumetshofer, Djork-Arne Clevert, Sepp Hochreiter, and Günter Klambauer · 2019
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A next generation connectivity map: L1000 platform and the first 1,000,000 profiles
Aravind Subramanian, Rajiv Narayan, Steven M Corsello, David D Peck, Ted E Natoli, Xiaodong Lu, Joshua Gould, John F Davis, Andrew A Tubelli, Jacob K Asiedu, et al · 2017
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Dynamic landscape and regulation of rna editing in mammals
Meng How Tan, Qin Li, Raghuvaran Shanmugam, Robert Piskol, Jennefer Kohler, Amy N Young, Kaiwen Ivy Liu, Rui Zhang, Gokul Ramaswami, Kentaro Ariyoshi, et al · 2017
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Model agnostic time series analysis via matrix estimation
Anish Agarwal, Muhammad Jehangir Amjad, Devavrat Shah, and Dennis Shen · 2018
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Umap: Uniform manifold approximation and projection for dimension reduction
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Emerging principles of gene expression programs and their regulation
Scott D Pope and Ruslan Medzhitov · 2018
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scGen predicts single-cell perturbation responses
Mohammad Lotfollahi, Alexander F Wolf, and Fabian J Theis · 2019
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Anish Agarwal, Devavrat Shah, and Dennis Shen · 2020
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