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Complex systems thinking is applied to a wide variety of domains, from neuroscience to computer science and economics.
Communication patterns in task-oriented groups
Alex Bavelas · 1950
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Homology groups of relations
Clifford H Dowker · 1952
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Some properties of line digraphs
Frank Harary and Robert Z Norman · 1960
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Some demographic and genetic consequences of environmental heterogeneity for biological control
Richard Levins · 1969
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From cohomology in physics to q-connectivity in social science
Ronald H Atkin · 1972
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Generalized and/or graphs
Giorgio Levi and Franco Sirovich · 1976
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A set of measures of centrality based on betweenness
Linton C Freeman · 1977
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Dynamic programming as graph searching: An algebraic approach
Stefania Gnesi, Ugo Montanari, and Alberto Martelli · 1981
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Structures induced by collections of subsets: A hypergraph approach
Stephen B Seidman · 1981
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Hypergraphs: Combinatorics of Finite Sets
Claude Berge · 1984
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What’s in an author’s name? differential evaluations of performance as a function of author’s name
Michele A Paludi and Lisa A Strayer · 1985
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Directed hypergraphs and applications
Giorgio Gallo, Giustino Longo, Stefano Pallottino, and Sang Nguyen · 1993
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A critical point for random graphs with a given degree sequence
Michael Molloy and Bruce Reed · 1995
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Collective dynamics of ‘small-world’networks
Duncan J Watts and Steven H Strogatz · 1998
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Emergence of scaling in random networks
Albert-László Barabási and Réka Albert · 1999
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Metapopulation Ecology
Ilkka Hanski · 1999
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Classes of small-world networks
Luıs A Nunes Amaral, Antonio Scala, Marc Barthélemy, and H Eugene Stanley · 2000
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Models of core/periphery structures
Stephen P Borgatti and Martin G Everett · 2000
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The interpretation and application of rent’s rule
Phillip Christie and Dirk Stroobandt · 2000
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Topological persistence and simplification
Herbert Edelsbrunner, David Letscher, and Afra Zomorodian · 2000
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The lunar l1 gateway-portal to the stars and beyond
Shane Ross and Martin Lo · 2001
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Modeling and simulation of genetic regulatory systems: a literature review
Hidde De Jong · 2002
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Bringing time back in: A study on the influence of travel time variations and facility opening hours on individual accessibility
Joe Weber and Mei-Po Kwan · 2002
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Pathways database system: an integrated system for biological pathways
Larkshmi Krishnamurthy, J Nadeau, Gultekin Ozsoyoglu, M Ozsoyoglu, Greg Schaeffer, Murat Tasan, and Wanhong Xu · 2003
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The Development of Social Network Analysis: A Study in the Sociology of Science
Linton Freeman · 2004
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Modularity from fluctuations in random graphs and complex networks
Roger Guimera, Marta Sales-Pardo, and Luís A Nunes Amaral · 2004
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Minimal cut sets in biochemical reaction networks
Steffen Klamt and Ernst Dieter Gilles · 2004
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Notch signaling: control of cell communication and cell fate
Eric C Lai · 2004
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A hypergraph model for the yeast protein complex network
Emad Ramadan, Arijit Tarafdar, and Alex Pothen · 2004
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Stations, trains and small-world networks
Katherine A Seaton and Lisa M Hackett · 2004
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Semantic feature production norms for a large set of living and nonliving things
Ken McRae, George S Cree, Mark S Seidenberg, and Chris McNorgan · 2005
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Uncovering the overlapping community structure of complex networks in nature and society
Gergely Palla, Imre Derényi, Illés Farkas, and Tamás Vicsek · 2005
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Network thinking in ecology and evolution
Stephen R Proulx, Daniel EL Promislow, and Patrick C Phillips · 2005
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Weighted adaptive neighborhood hypergraph partitioning for image segmentation
Soufiane Rital, Hocine Cherifi, and Serge Miguet · 2005
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Computing persistent homology
Afra Zomorodian and Gunnar Carlsson · 2005
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A resilient, low-frequency, small-world human brain functional network with highly connected association cortical hubs
Sophie Achard, R Salvador, B Whitcher, John Suckling, and Edward Bullmore · 2006
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Small-world brain networks
Danielle Smith Bassett and Edward T Bullmore · 2006
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The role of the airline transportation network in the prediction and predictability of global epidemics
Vittoria Colizza, Alain Barrat, Marc Barthélemy, and Alessandro Vespignani · 2006
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Subgraph centrality and clustering in complex hyper-networks
Ernesto Estrada and Juan A Rodríguez-Velázquez · 2006
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What are emergent properties and how do they affect the engineering of complex systems?
Christopher W Johnson · 2006
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Complex systems: Network thinking
Melanie Mitchell · 2006
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Ecological networks and their fragility
José M Montoya, Stuart L Pimm, and Ricard V Solé · 2006
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The network analysis of urban streets: a primal approach
Sergio Porta, Paolo Crucitti, and Vito Latora · 2006
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Network inference, analysis, and modeling in systems biology
Réka Albert · 2007
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Network motifs: theory and experimental approaches
Uri Alon · 2007
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Characterization of complex networks: A survey of measurements
L da F Costa, Francisco A Rodrigues, Gonzalo Travieso, and Paulino Ribeiro Villas Boas · 2007
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The structure of interurban traffic: a weighted network analysis
Andrea De Montis, Marc Barthélemy, Alessandro Chessa, and Alessandro Vespignani · 2007
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Network harness: Metropolis public transport
Christian von Ferber, Taras Holovatch, Yu Holovatch, and Vasyl Palchykov · 2007
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On the local behavior of spaces of natural images
Gunnar Carlsson, Tigran Ishkhanov, Vin De Silva, and Afra Zomorodian · 2008
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Epidemic thresholds in real networks
Deepayan Chakrabarti, Yang Wang, Chenxi Wang, Jure Leskovec, and Christos Faloutsos · 2008
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Epidemic modeling in metapopulation systems with heterogeneous coupling pattern: Theory and simulations
Vittoria Colizza and Alessandro Vespignani · 2008
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Barcodes: the persistent topology of data
Robert Ghrist · 2008
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Simplicial complexes of networks and their statistical properties
Slobodan Maletić, Milan Rajković, and Danijela Vasiljević · 2008
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Echo phenomena in large systems of coupled oscillators
Edward Ott, J H Platig, T M Antonsen, and Michelle Girvan · 2008
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On finding hypercycles in chemical reaction networks
Can Özturan · 2008
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Spatial network analysis of public transport systems: Developing a strategic planning tool to assess the congruence of movement and urban structure in Australian cities
Jan Scheurer, Carey Curtis, and Sergio Porta · 2008
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Topological analysis of population activity in visual cortex
Gurjeet Singh, Facundo Memoli, Tigran Ishkhanov, Guillermo Sapiro, Gunnar Carlsson, and Dario L Ringach · 2008
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Endogenous human brain dynamics recover slowly following cognitive effort
Anna Barnes, Edward T Bullmore, and John Suckling · 2009
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Complex brain networks: graph theoretical analysis of structural and functional systems
Edward T. Bullmore and Olaf Sporns · 2009
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Topology and data
Gunnar Carlsson · 2009
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Topology of random clique complexes
Matthew Kahle · 2009
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Hypergraphs and cellular networks
Steffen Klamt, Utz-Uwe Haus, and Fabian Theis · 2009
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Complexity: A Guided Tour
Melanie Mitchell · 2009
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Towards community detection in k-partite k-uniform hypergraphs
Nicolas Neubauer and Klaus Obermayer · 2009
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Higher-dimensional models of networks
David I Spivak · 2009
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A hypergraph-based learning algorithm for classifying gene expression and arraycgh data with prior knowledge
Ze Tian, TaeHyun Hwang, and Rui Kuang · 2009
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Introduction to Graph and Hypergraph Theory
Vitaly Ivanovich Voloshin · 2009
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Public transport networks: empirical analysis and modeling
Christian Von Ferber, Taras Holovatch, Yu Holovatch, and V Palchykov · 2009
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Efficient physical embedding of topologically complex information processing networks in brains and computer circuits
Danielle S Bassett, Daniel L Greenfield, Andreas Meyer-Lindenberg, Daniel R Weinberger, Simon W Moore, and Edward T Bullmore · 2010
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Protein–protein interactions essentials: key concepts to building and analyzing interactome networks
Javier De Las Rivas and Celia Fontanillo · 2010
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Community structure in time-dependent, multiscale, and multiplex networks
Peter J Mucha, Thomas Richardson, Kevin Macon, Mason A Porter, and Jukka-Pekka Onnela · 2010
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Construction and analysis of protein–protein interaction networks
Karthik Raman · 2010
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Complex network measures of brain connectivity: uses and interpretations
Mikail Rubinov and Olaf Sporns · 2010
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Networks of motifs from sequences of symbols
R Sinatra, D Condorelli, and V Latora · 2010
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Identifying the community structure of the international-trade multi-network
Matteo Barigozzi, Giorgio Fagiolo, and Giuseppe Mangioni · 2011
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Spatial networks
Marc Barthélemy · 2011
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Graph algorithms
Shimon Even · 2011
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Uncovering space-independent communities in spatial networks
Paul Expert, Tim S Evans, Vincent D Blondel, and Renaud Lambiotte · 2011
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Applications of sheaf cohomology and exact sequences to network coding
Robert Ghrist and Yasuaki Hiraoka · 2011
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The modular organization of human anatomical brain networks: Accounting for the cost of wiring
Richard F. Betzel, John D. Medaglia, Lia Papadopoulos, Graham L Baum, Ruben Gur, Raquel Gur, David Roalf, Theodore D Satterthwaite, and Danielle S Bassett · 2017
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Graphons: A nonparametric method to model, estimate, and design algorithms for massive networks
Christian Borgs and Jennifer Chayes · 2017
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Quantitative evaluation of gender bias in astronomical publications from citation counts
Neven Caplar, Sandro Tacchella, and Simon Birrer · 2017
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Data-driven predictions in the science of science
Aaron Clauset, Daniel B Larremore, and Roberta Sinatra · 2017
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What can topology tell us about the neural code?
Carina Curto · 2017
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What makes a neural code convex?
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Spatial and temporal analysis of congestion in urban transportation networks
Yuxuan Ji and Nikolas Geroliminis · 2011
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Zigzag persistent homology in matrix multiplication time
Nikola Milosavljević, Dmitriy Morozov, and Primoz Skraba · 2011
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Wiring economy and volume exclusion determine neuronal placement in the drosophila brain
Marta Rivera-Alba, Shiv N Vitaladevuni, Yuriy Mishchenko, Zhiyuan Lu, Shin-ya Takemura, Lou Scheffer, Ian A Meinertzhagen, Dmitri B Chklovskii, and Gonzalo G de Polavieja · 2011
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Metapopulation models for seasonally migratory animals
Caz M Taylor and Richard J Hall · 2011
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Gene-centered regulatory network mapping
Albertha JM Walhout · 2011
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Properties of metabolic graphs: biological organization or representation artifacts?
Wanding Zhou and Luay Nakhleh · 2011
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Carina Curto, Elizabeth Gross, Jack Jeffries, Katherine Morrison, Mohamed Omar, Zvi Rosen, Anne Shiu, and Nora Youngs · 2017
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Mapping higher-order network flows in memory and multilayer networks with infomap
Daniel Edler, Ludvig Bohlin, et al · 2017
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Functional hypergraph uncovers novel covariant structures over neurodevelopment
Shi Gu, Muzhi Yang, John D Medaglia, Ruben C Gur, Raquel E Gur, Theodore D Satterthwaite, and Danielle S Bassett · 2017
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Community detection in hypergraphs, spiked tensor models, and sum-of-squares
Chiheon Kim, Afonso S Bandeira, and Michel X Goemans · 2017
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Proteomics profiling of interactome dynamics by colocalisation analysis (cola)
Faraz K Mardakheh, Heba Z Sailem, Sandra Kümper, Christopher J Tape, Ryan R McCully, Angela Paul, Sara Anjomani-Virmouni, Claus Jørgensen, George Poulogiannis, Christopher J Marshall, et al · 2017
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A roadmap for the computation of persistent homology
Nina Otter, Mason A Porter, U Tillmann, P Grindrod, and Heather A Harrington · 2017
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Development of structural correlations and synchronization from adaptive rewiring in networks of kuramoto oscillators
Lia Papadopoulos, Jason Z Kim, Jürgen Kurths, and Danielle S Bassett · 2017
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Cliques of neurons bound into cavities provide a missing link between structure and function
Michael W Reimann, Max Nolte, Martina Scolamiero, Katharine Turner, Rodrigo Perin, Giuseppe Chindemi, Paweł Dłotko, Ran Levi, Kathryn Hess, and Henry Markram · 2017
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Hypenet: Visualizing dynamic hypergraphs
Paola Valdivia, Paolo Buono, and Jean-Daniel Fekete · 2017
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Information-theoretical analysis of resting state EEG microstate sequences - non-Markovianity, non-stationarity and periodicities
F von Wegner, E Tagliazucchi, and H Laufs · 2017
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On the linear threshold model for diffusion of innovations in multiplex social networks
Yaofeng D Zhong, V Srivastava, and Naomi E. Leonard · 2017
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Network analysis of conversation data for engineering professional skills assessment
Mengxiao Zhu and Mo Zhang · 2017
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Transitions in spatial networks
Marc Barthélemy · 2018
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Simplicial closure and higher-order link prediction
Austin R. Benson, Rediet Abebe, Michael T. Schaub, Ali Jadbabaie, and Jon M. Kleinberg · 2018
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Sequences of sets
Austin R Benson, Ravi Kumar, and Andrew Tomkins · 2018
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Multilayer Networks: Structure and Function
Ginestra Bianconi · 2018
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# communicationsowhite
Paula Chakravartty, Rachel Kuo, Victoria Grubbs, and Charlton McIlwain · 2018
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Dense power-law networks and simplicial complexes
O T Courtney and G Bianconi · 2018
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A topological analysis of targeted in-111 uptake in spect images of murine tumors
David B Damiano and Melissa R McGuirl · 2018
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Gendered citation patterns across political science and social science methodology fields
Michelle L Dion, Jane Lawrence Sumner, and Sara McLaughlin Mitchell · 2018
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Metaplex networks: influence of the exo-endo structure of complex systems on diffusion
Ernesto Estrada, Gissell Estrada-Rodriguez, and Heiko Gimperlein · 2018
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Centralities in simplicial complexes. applications to protein interaction networks
Ernesto Estrada and Grant J Ross · 2018
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Disruption of the protein complexes from weighted complex networks
Mahnaz Habibi and Pegah Khosravi · 2018
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Evidence of rentian scaling of functional modules in diverse biological networks
Javier J How and Saket Navlakha · 2018
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Modeling and interpreting mesoscale network dynamics
Ankit N Khambhati, Ann E Sizemore, Richard F Betzel, and Danielle S Bassett · 2018
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Evolutionary dynamics of cryptocurrency transaction networks: An empirical study
Jiaqi Liang, L Li, and Daniel Zeng · 2018
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Networks
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The role of hippocampal replay in memory and planning
H Freyja Ólafsdóttir, Daniel Bush, and Caswell Barry · 2018
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Interrogation of mammalian protein complex structure, function, and membership using genome-scale fitness screens
Joshua Pan, Robin M Meyers, Brittany C Michel, Nazar Mashtalir, Ann E Sizemore, Jonathan N Wells, Seth H Cassel, Francisca Vazquez, Barbara A Weir, William C Hahn, et al · 2018
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Comparing two classes of biological distribution systems using network analysis
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Network analysis of particles and grains
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A topological approach to representational data models
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Multi-layer public transport network analysis
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Dynamic graph metrics: Tutorial, toolbox, and tale
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Cliques and cavities in the human connectome
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Knowledge gaps in the early growth of semantic feature networks
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Multiplex model of mental lexicon reveals explosive learning in humans
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Spatial embedding imposes constraints on neuronal network architectures
Jennifer Stiso and Danielle S Bassett · 2018
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Topological data analysis of task-based fmri data from experiments on schizophrenia
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Just ideas? the status and future of publication ethics in philosophy: A white paper
Yannik Thiem, Kris F Sealey, Amy E Ferrer, Adriel M Trott, and Rebecca Kennison · 2018
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Simplex2vec embeddings for community detection in simplicial complexes
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Brain modularity: A biomarker of intervention-related plasticity
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The multiplex network of human diseases
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Simplicial models of social contagion
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Tracing patterns and shapes in remittance and migration networks via persistent homology
Paul Samuel P Ignacio and Isabel K Darcy · 2019
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Simplicial sis model in scale-free uniform hypergraph
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Cwl-airflow: a lightweight pipeline manager supporting common workflow language
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From networks to optimal higher-order models of complex systems
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Model-driven discovery of calcium-related protein-phosphatase inhibition in plant guard cell signaling
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Persistent homology analysis of brain transcriptome data in autism
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White matter network architecture guides direct electrical stimulation through optimal state transitions
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