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In this article, we present QuASeR, a reference-free DNA sequence reconstruction implementation via de novo assembly on both gate-based and quantum annealing platforms.
Algorithms on strings, trees and sequences: computer science and computational biology
Dan Gusfield · 1997
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The molen polymorphic processor
S. Vassiliadis, S. Wong, G. N. Gaydadjiev, K. Bertels, G.K. Kuzmanov, and E. Moscu Panainte · 2004
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Computational biology methods and their application to the comparative genomics of endocellular symbiotic bacteria of insects
Jennifer Commins, Christina Toft, and Mario A Fares · 2009
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The path to personalized medicine
Margaret A Hamburg and Francis S Collins · 2010
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Assembly algorithms for next-generation sequencing data
Jason R Miller, Sergey Koren, and Granger Sutton · 2010
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In pursuit of the traveling salesman: mathematics at the limits of computation
William J Cook · 2011
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A quantum approximate optimization algorithm
Edward Farhi, Jeffrey Goldstone, and Sam Gutmann · 2014
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Big data: astronomical or genomical?
Zachary D Stephens, Skylar Y Lee, Faraz Faghri, Roy H Campbell, Chengxiang Zhai, Miles J Efron, Ravishankar Iyer, Michael C Schatz, Saurabh Sinha, and Gene E Robinson · 2015
Cited alongside, same era.
Practical optimization for hybrid quantum-classical algorithms
Gian Giacomo Guerreschi and Mikhail Smelyanskiy · 2017
Cited alongside, same era.
The cost of sequencing a human genome, 2018
2018
Cited alongside, same era.
A comprehensive study of de novo genome assemblers: current challenges and future prospective
Abdul Rafay Khan, Muhammad Tariq Pervez, Masroor Ellahi Babar, Nasir Naveed, and Muhammad Shoaib · 2018
Cited alongside, same era.
Quantum chemistry in the age of quantum computing
Yudong Cao, Jonathan Romero, Jonathan P Olson, Matthias Degroote, Peter D Johnson, Mária Kieferová, Ian D Kivlichan, Tim Menke, Borja Peropadre, Nicolas PD Sawaya, et al · 2018
Cited alongside, same era.
An algorithm for dna read alignment on quantum accelerators
Aritra Sarkar, Zaid Al-Ars, Carmen G Almudever, and Koen Bertels · 2019
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From the quantum approximate optimization algorithm to a quantum alternating operator ansatz
Stuart Hadfield, Zhihui Wang, Bryan O’Gorman, Eleanor G Rieffel, Davide Venturelli, and Rupak Biswas · 2019
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Performance of hybrid quantum-classical variational heuristics for combinatorial optimization
Giacomo Nannicini · 2019
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Learning to optimize variational quantum circuits to solve combinatorial problems
Sami Khairy, Ruslan Shaydulin, Lukasz Cincio, Yuri Alexeev, and Prasanna Balaprakash · 2019
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Multistart methods for quantum approximate optimization
Ruslan Shaydulin, Ilya Safro, and Jeffrey Larson · 2019
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A tutorial on formulating qubo models
Fred Glover and Gary Kochenberger · 2018
Cited alongside, same era.
Barren plateaus in quantum neural network training landscapes
Jarrod R McClean, Sergio Boixo, Vadim N Smelyanskiy, Ryan Babbush, and Hartmut Neven · 2018
Cited alongside, same era.
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Ocean software stack - ocean documentation 2.0.1 2020, 2020
2020
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