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Inspired by the success of the General Language Understanding Evaluation benchmark, we introduce the Biomedical Language Understanding Evaluation (BLUE) benchmark to facilitate research in the development of pre-training language representations in the biomedicine domain.
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Yifan Peng, Anthony Rios, Ramakanth Kavuluru, and Zhiyong Lu. 2018 · 2018
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Guillaume Lample, Miguel Ballesteros, Sandeep Subramanian, Kazuya Kawakami, and Chris Dyer. 2016 · 2016
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BioCreative V CDR task corpus: a resource for chemical disease relation extraction
Jiao Li, Yueping Sun, Robin J Johnson, Daniela Sciaky, Chih-Hsuan Wei, Robert Leaman, Allan Peter Davis, Carolyn J Mattingly, Thomas C Wiegers, and Zhiyong Lu. 2016 · 2016
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Oren Melamud, David McClosky, Siddharth Patwardhan, and Mohit Bansal. 2016 · 2016
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Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task
Chih-Hsuan Wei, Yifan Peng, Robert Leaman, Allan Peter Davis, Carolyn J Mattingly, Jiao Li, Thomas C Wiegers, and Zhiyong Lu. 2016 · 2016
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Overview of the BioCreative VI chemical-protein interaction track
Martin Krallinger, Obdulia Rabal, Saber A. Akhondi, Martín Pérez Pérez, Jesús Santamaría, Gael Pérez Rodríguez, Georgios Tsatsaronis, Ander Intxaurrondo, José Antonio López1 Umesh Nandal, Erin Van Buel, Akileshwari Chandrasekhar, Marleen Rodenburg, Astrid Laegreid, Marius Doornenbal, Julen Oyarzabal, Analia Lourenço, and Alfonso Valencia. 2017 · 2017
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Wonjin Yoon, Chan Ho So, Jinhyuk Lee, and Jaewoo Kang. 2018 · 2018
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Drug-drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths
Yijia Zhang, Wei Zheng, Hongfei Lin, Jian Wang, Zhihao Yang, and Michel Dumontier. 2018 · 2018
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BioSentVec: creating sentence embeddings for biomedical texts
Qingyu Chen, Yifan Peng, and Zhiyong Lu. 2019 · 2019
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Unsupervised low-dimensional vector representations for words, phrases and text that are transparent, scalable, and produce similarity metrics that are not redundant with neural embeddings
Neil R Smalheiser, Aaron M Cohen, and Gary Bonifield. 2019 · 2019
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BioWordVec, improving biomedical word embeddings with subword information and mesh
Yijia Zhang, Qingyu Chen, Zhihao Yang, Hongfei Lin, and Zhiyong Lu. 2019 · 2019
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