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Lattice models have been used extensively over the past thirty years to examine the principles of protein folding and design.
Theory for the folding and stability of globular proteins
Dill, K. A. (1985) · 1985
Earlier work this paper cites.
Estimation of effective interresidue contact energies from protein crystal structures: quasi-chemical approximation
Miyazawa, S. and Jernigan, R. L. (1985) · 1985
Earlier work this paper cites.
A lattice statistical mechanics model of the conformational and sequence spaces of proteins
Lau, K. F. and Dill, K. A. (1989) · 1989
Earlier work this paper cites.
Finding the lowest free energy conformation of a protein is an np-hard problem: proof and implications
Unger, R. and Moult, J. (1993) · 1993
Earlier work this paper cites.
Robust proofs of np-hardness for protein folding: general lattices and energy potentials
Hart, W. E. and Istrail, S. (1997) · 1997
Earlier work this paper cites.
Protein folding in the hydrophobic-hydrophilic (hp) model is np-complete
Berger, B. and Leighton, T. (1998) · 1998
Earlier work this paper cites.
Designing a 20-residue protein
Neidigh, J. W., Fesinmeyer, R. M., and Andersen, N. H. (2002) · 2002
Earlier work this paper cites.
10 residue folded peptide designed by segment statistics
Honda, S., Yamasaki, K., Sawada, Y., and Morii, H. (2004) · 2004
Cited alongside, same era.
Construction of model hamiltonians for adiabatic quantum computation and its application to finding low-energy conformations of lattice protein models
Perdomo, A., Truncik, C., Tubert-Brohman, I., Rose, G., and Aspuru-Guzik, A. (2008) · 2008
Cited alongside, same era.
Producing high-accuracy lattice models from protein atomic coordinates including side chains
Mann, M., Saunders, R., Smith, C., Backofen, R., and Deane, C. M. (2012) · 2012
Cited alongside, same era.
Finding low-energy conformations of lattice protein models by quantum annealing
Perdomo-Ortiz, A., Dickson, N., Drew-Brook, M., Rose, G., and Aspuru-Guzik, A. (2012) · 2012
Cited alongside, same era.
Resource efficient gadgets for compiling adiabatic quantum optimization problems
Babbush, R., O’Gorman, B., and Aspuru-Guzik, A. (2013) · 2013
Cited alongside, same era.
Graph minor embeddings for d-wave computer architecture
Yang, Z. and Dinneen, M. J. (2016) · 2016
Later among the works it cites.
Qantum approximate optimization with hard and soft constraints
Hadfield, S., Wang, Z., Rieffel, E. G., O’Gorman, B., Venturelli, D., and Biswas, R. (2017) · 2017
Later among the works it cites.
Quantum annealing amid local ruggedness and global frustration
King, J., Yarkoni, S., Raymond, J., Ozfidan, I., King, A. D., Nevisi, M. M., Hilton, J. P., and McGeoch, C. C. (2017) · 2017
Later among the works it cites.
A deceptive step towards quantum speedup detection
Mandrà, S. and Katzgraber, H. G. (2017) · 2017
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Sunway TaihuLight
in Wuxi, N. S. C. (2018) · 2018
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Introducing Titan
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Farhi, E., Goldstone, J., and Gutmann, S. (2014) · 2014
Cited alongside, same era.
What is the computational value of finite-range tunneling?
Denchev, V. S., Boixo, S., Isakov, S. V., Ding, N., Babbush, R., Smelyanskiy, V., Martinis, J., and Neven, H. (2016) · 2016
Cited alongside, same era.
Babbush, R., Perdomo-Ortiz, A., O’Gorman, B., Macready, W., and Aspuru-Guzik, A. (2012a)
Cited in the paper.
Construction of energy functions for lattice heteropolymer models: Efficient encodings for constraint satisfaction programming and quantum annealing
Babbush, R., Perdomo-Ortiz, A., O’Gorman, B., Macready, W., and Aspuru-Guzik, A. (2012b)
Cited in the paper.
Oak Ridge National Laboratory (2018) · 2018
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