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Antibodies are a critical part of the immune system, having the function of directly neutralising or tagging undesirable objects (the antigens) for future destruction.
Standard conformations for the canonical structures of immunoglobulins
Al-Lazikani, Bissan, Lesk, Arthur M, and Chothia, Cyrus · 1997
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Generation and evaluation of dimension-reduced amino acid parameter representations by artificial neural networks
Meiler, Jens, Müller, Michael, Zeidler, Anita, and Schmäschke, Felix · 2001
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Understanding the difficulty of training deep feedforward neural networks
Glorot, Xavier and Bengio, Yoshua · 2010
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Antibody i-patch prediction of the antibody binding site improves rigid local antibody–antigen docking
Krawczyk, Konrad, Baker, Terry, Shi, Jiye, and Deane, Charlotte M · 2013
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Prediction of site-specific interactions in antibody-antigen complexes: the proabc method and server
Olimpieri, Pier Paolo, Chailyan, Anna, Tramontano, Anna, and Marcatili, Paolo · 2013
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Dunbar, James, Krawczyk, Konrad, Leem, Jinwoo, Baker, Terry, Fuchs, Angelika, Georges, Guy, Shi, Jiye, and Deane, Charlotte M · 2014
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Vaswani, Ashish, Shazeer, Noam, Parmar, Niki, Uszkoreit, Jakob, Jones, Llion, Gomez, Aidan N., Kaiser, Lukasz, and Polosukhin, Illia · 2017
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Parapred: Antibody paratope prediction using convolutional and recurrent neural networks
Liberis, Edgar, Veličković, Petar, Sormanni, Pietro, Vendruscolo, Michele, and Liò, Pietro · 2018
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Graph Attention Networks
Veličković, Petar, Cucurull, Guillem, Casanova, Arantxa, Romero, Adriana, Liò, Pietro, and Bengio, Yoshua · 2018
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