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We propose generative neural network methods to generate DNA sequences and tune them to have desired properties.
Long short-term memory
Sepp Hochreiter and Jürgen Schmidhuber · 1997
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Initial sequencing and analysis of the human genome
Eric S Lander, Lauren M Linton, Bruce Birren, Chad Nusbaum, Michael C Zody, Jennifer Baldwin, Keri Devon, Ken Dewar, Michael Doyle, William FitzHugh, et al · 2001
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The human genome browser at UCSC
W James Kent, Charles W Sugnet, Terrence S Furey, Krishna M Roskin, Tom H Pringle, Alan M Zahler, and David Haussler · 2002
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Alex Graves · 2013
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Generative adversarial nets
Ian Goodfellow, Jean Pouget-Abadie, Mehdi Mirza, Bing Xu, David Warde-Farley, Sherjil Ozair, Aaron Courville, and Yoshua Bengio · 2014
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Adam: A method for stochastic optimization
Diederik Kingma and Jimmy Ba · 2014
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On the properties of neural machine translation: Encoder-decoder approaches
Kyunghyun Cho, Bart Van Merriënboer, Dzmitry Bahdanau, and Yoshua Bengio · 2014
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Empirical evaluation of gated recurrent neural networks on sequence modeling
Junyoung Chung, Caglar Gulcehre, KyungHyun Cho, and Yoshua Bengio · 2014
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Understanding neural networks through deep visualization
Jason Yosinski, Jeff Clune, Anh Nguyen, Thomas Fuchs, and Hod Lipson · 2015
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Inceptionism: Going deeper into neural networks
Alexander Mordvintsev, Christopher Olah, and Mike Tyka · 2015
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A neural algorithm of artistic style
Leon A Gatys, Alexander S Ecker, and Matthias Bethge · 2015
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Predicting the sequence specificities of dna-and rna-binding proteins by deep learning
Babak Alipanahi, Andrew Delong, Matthew T Weirauch, and Brendan J Frey · 2015
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The unreasonable effectiveness of recurrent neural networks
Andrej Karpathy · 2015
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Samuel R Bowman, Luke Vilnis, Oriol Vinyals, Andrew M Dai, Rafal Jozefowicz, and Samy Bengio · 2015
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Xi Chen, Diederik P Kingma, Tim Salimans, Yan Duan, Prafulla Dhariwal, John Schulman, Ilya Sutskever, and Pieter Abbeel · 2016
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