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Many real world graphs, such as the graphs of molecules, exhibit structure at multiple different scales, but most existing kernels between graphs are either purely local or purely global in character.
Structure-activity relationship of mutagenic aromatic and heteroaromatic nitro compounds. correlation with molecular orbital energies and hydrophobicity
Debnat, A.K., de Compadre, R. L. Lopez, Debnath, G., j. Shusterman, A., and Hansch, C · 1991
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Kernel PCA and de-noising in feature spaces
Mika, S., Schölkopf, B., Smola, A. J., Müller, K.-R., Scholz, Matthias, and Rätsch, G · 1999
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Using the Nyström method to speed up kernel machines
Williams, Christopher K. I. and Seeger, Mattias · 2001
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Exponential and geometric kernels for graphs
Gärtner, T · 2002
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Learning with Kernels
Schölkopf, Bernhard and Smola, Alexander J · 2002
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Statistical evaluation of the predictive toxicology challenge
H.Toivonen, Srinivasan, A., King, R. D., Kramer, S., and Helma, C · 2003
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Complete mining of frequent patterns from graphs: Mining graph data
Inokuchi, Akihiro, Washio, Takashi, and Motoda, Hiroshi · 2003
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Bhattacharyya and expected likelihood kernels
Jebara, Tony and Kondor, Risi · 2003
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A kernel between sets of vectors
Kondor, Risi and Jebara, Tony · 2003
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Drug research: myths, hype and reality
Kubinyi, H · 2003
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Protein function prediction via graph kernels
Borgwardt, K. M., Ong, C. S., Schönauer, S., Vishwanathan, S. V. N., Smola, A. J., and Kriegel, H.-P · 2005
Cited alongside, same era.
Shortest-path kernels on graphs
Borgwardt, Karsten M. and Kriegel, Hans Peter · 2005
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On the Nyström method for approximating a Gram matrix for improved kernel-based learning
Drineas, Petros and Mahoney, Michael W · 2005
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The ring of graph invariants — graphic values
Mikkonen, T · 2007
Cited alongside, same era.
Comparison of descriptor spaces for chemical compound retrieval and classification
Wale, N., Watson, I. A., and Karypis, G · 2008
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A Concise and Provably Informative Multi-Scale Signature Based on Heat Diffusion
Alexa, Marc, Kazhdan, Michael, and Guibas, Leonidas · 2009
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Efficient graphlet kernels for large graph comparison
Shervashidze, Nino, Vishwanathan, S. V. N., Petri, Tobias, Mehlhorn, Kurt, and Borgwardt, Karsten M · 2009
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On graph kernels
Vishwanathan, S. V. N., Borgwardt, Karsten, Kondor, Risi, and Schraudolph, Nicol · 2010
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Libsvm: A library for support vector machines
Chang, Chih-Chung and Lin, Chih-Jen · 2011
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Weisfeiler-lehman graph kernels
Shervashidze, Nino, Schweitzer, Pascal, van Leeuwen, Erik Jan, Mehlhorn, Kurt, and Borgwardt, Karsten M · 2011
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Kondor, Risi and Borgwardt, Karsten · 2008
Cited alongside, same era.
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Scalable kernels for graphs with continuous attributes
Feragen, Aasa, Kasenburg, Niklas, Petersen, Jens, de Bruijne, Marleen, and Borgwardt, Karsten M · 2013
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